Click here to switch to the map view.

The map label for this gene is yqhC [H]

Identifier: 17547310

GI number: 17547310

Start: 2796769

End: 2797659

Strand: Direct

Name: yqhC [H]

Synonym: RSc2591

Alternate gene names: 17547310

Gene position: 2796769-2797659 (Clockwise)

Preceding gene: 17547292

Following gene: 17547311

Centisome position: 75.25

GC content: 59.48

Gene sequence:

>891_bases
ATGATTAACCTCGACCAGATCCGCGCGATGGCGATGCGCCACGCTGGGCGCAAACACCCACAACTGCCGAGACTGTTCAC
TTACACCCTCAACCATACGACCGAGGTGGACCCGTTGATCTACGATCCTGCGGCGTCCTTGGTGGTCCAGGGGACGCAAC
GCATGTTTATCGGCGAGAAGATGTTTGAGTACGGCCCTGGTCAAAGCATGGTCGTTGCCGCTGAGATTGCAGCACTAGGC
CAGGTGTGCGAGGCGTCCGAAGAGAAGCCATTCATTGCCGTCGGTCTGTTCCTGGACCAGGCCCAACTGTCTGACCTCGT
TCTCGAAATGGCCGCCTTGCCGGAGCTGCCGATCGAAGCCGGATATGGCGTCAGTACCGCGAGCGCGTCGCTATTGGGTG
CCTGGGGAAGGCTTCTGGGACTGCTCGACCGCCCGAACGAAATCCCTGTCATGGCTCAGTCGCTGGAACACGAAATCATG
TTCCGGCTTCTGATGGGACCGCATGGCGGCCTGCTCCGCCAGATCGCCGGGGCCGATTCACGCCTGATGCACATCAGGAG
GGCCATGGCTTGGATACGAGACCACTACACCGAGCGTCTCGACTTCAAGGCGGTCGCTGCTCTGGCGGGCATGAGCGTAT
CGGTCTTCTATGATCGCTTCAAAGCTGTCGCCGCTGTGAGCCCGCTTCAGTACCAAAAGTACATCCGGCTGCACGAGGCA
CGGCGTCGCATGATCGCGAACCAGACAACCGCAGCCGAAGCGAGTTACGTGGTCGGCTACGAAAGTGCCTCGCAGTTCAG
TCGAGAGTACAAACGCCTGTTCGGTGCGCCGCCGGGTCAAGACACCGAGAAAGCTAGGTTGAGCTTGGGTCAAAACAGCC
GGTCAATATAA

Upstream 100 bases:

>100_bases
GATAGGTGCCGGCCCGCAAAGCCACGATGCCAATTCTTGCGCCGTTATTGCCTGATTTTCCTGAATTGATGATAATTTCA
GGCAATCACAAGGTGCCGCC

Downstream 100 bases:

>100_bases
CTTGGCGCTCCACCGGATGTTCCTTGGAAACGGCCGTCGCCAAGGCGCGGGCGCCCAGGCCCGACAAACAGTCTGGATTC
ACTTATTCCCTGGAGAACAT

Product: transcriptional regulator transcription regulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MINLDQIRAMAMRHAGRKHPQLPRLFTYTLNHTTEVDPLIYDPAASLVVQGTQRMFIGEKMFEYGPGQSMVVAAEIAALG
QVCEASEEKPFIAVGLFLDQAQLSDLVLEMAALPELPIEAGYGVSTASASLLGAWGRLLGLLDRPNEIPVMAQSLEHEIM
FRLLMGPHGGLLRQIAGADSRLMHIRRAMAWIRDHYTERLDFKAVAALAGMSVSVFYDRFKAVAAVSPLQYQKYIRLHEA
RRRMIANQTTAAEASYVVGYESASQFSREYKRLFGAPPGQDTEKARLSLGQNSRSI

Sequences:

>Translated_296_residues
MINLDQIRAMAMRHAGRKHPQLPRLFTYTLNHTTEVDPLIYDPAASLVVQGTQRMFIGEKMFEYGPGQSMVVAAEIAALG
QVCEASEEKPFIAVGLFLDQAQLSDLVLEMAALPELPIEAGYGVSTASASLLGAWGRLLGLLDRPNEIPVMAQSLEHEIM
FRLLMGPHGGLLRQIAGADSRLMHIRRAMAWIRDHYTERLDFKAVAALAGMSVSVFYDRFKAVAAVSPLQYQKYIRLHEA
RRRMIANQTTAAEASYVVGYESASQFSREYKRLFGAPPGQDTEKARLSLGQNSRSI
>Mature_296_residues
MINLDQIRAMAMRHAGRKHPQLPRLFTYTLNHTTEVDPLIYDPAASLVVQGTQRMFIGEKMFEYGPGQSMVVAAEIAALG
QVCEASEEKPFIAVGLFLDQAQLSDLVLEMAALPELPIEAGYGVSTASASLLGAWGRLLGLLDRPNEIPVMAQSLEHEIM
FRLLMGPHGGLLRQIAGADSRLMHIRRAMAWIRDHYTERLDFKAVAALAGMSVSVFYDRFKAVAAVSPLQYQKYIRLHEA
RRRMIANQTTAAEASYVVGYESASQFSREYKRLFGAPPGQDTEKARLSLGQNSRSI

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=254, Percent_Identity=35.8267716535433, Blast_Score=156, Evalue=2e-39,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32840; Mature: 32840

Theoretical pI: Translated: 8.41; Mature: 8.41

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINLDQIRAMAMRHAGRKHPQLPRLFTYTLNHTTEVDPLIYDPAASLVVQGTQRMFIGEK
CCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCEEECCHHHHHHHHHHHHHHHHH
MFEYGPGQSMVVAAEIAALGQVCEASEEKPFIAVGLFLDQAQLSDLVLEMAALPELPIEA
HHHCCCCCCEEHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCC
GYGVSTASASLLGAWGRLLGLLDRPNEIPVMAQSLEHEIMFRLLMGPHGGLLRQIAGADS
CCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHH
RLMHIRRAMAWIRDHYTERLDFKAVAALAGMSVSVFYDRFKAVAAVSPLQYQKYIRLHEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
RRRMIANQTTAAEASYVVGYESASQFSREYKRLFGAPPGQDTEKARLSLGQNSRSI
HHHHHHCCCHHHCCCEEEECHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCC
>Mature Secondary Structure
MINLDQIRAMAMRHAGRKHPQLPRLFTYTLNHTTEVDPLIYDPAASLVVQGTQRMFIGEK
CCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCEEECCHHHHHHHHHHHHHHHHH
MFEYGPGQSMVVAAEIAALGQVCEASEEKPFIAVGLFLDQAQLSDLVLEMAALPELPIEA
HHHCCCCCCEEHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCC
GYGVSTASASLLGAWGRLLGLLDRPNEIPVMAQSLEHEIMFRLLMGPHGGLLRQIAGADS
CCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHH
RLMHIRRAMAWIRDHYTERLDFKAVAALAGMSVSVFYDRFKAVAAVSPLQYQKYIRLHEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
RRRMIANQTTAAEASYVVGYESASQFSREYKRLFGAPPGQDTEKARLSLGQNSRSI
HHHHHHCCCHHHCCCEEEECHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]