| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
Click here to switch to the map view.
The map label for this gene is icc [H]
Identifier: 17546514
GI number: 17546514
Start: 1930172
End: 1931020
Strand: Direct
Name: icc [H]
Synonym: RSc1795
Alternate gene names: 17546514
Gene position: 1930172-1931020 (Clockwise)
Preceding gene: 17546513
Following gene: 17546516
Centisome position: 51.94
GC content: 73.26
Gene sequence:
>849_bases ATGCACTTCCTGCAACTGACCGACCTCCACATCAAGCCGCCCGGCCGCCTGGCCTACCGGCGCGTCGATACGGCCGCCTA CCTGTCACGCTGCGTCGCGCACATCCTGGCGCAGCCCGCGCGCCCCGATGCCATCGTGCTGACCGGTGACCTGGTCGACG CCGGCGCGCCGGACGAATACGCGCACCTGCGCGCGCTGCTGGCGCCGCTCGACGCCGCCGGCATCCGCATGCTGCCGGTG CTCGGCAACCACGATGCCCGCGCGGCCGCGCACGAGGCCTTCGCCGATTGGCTCGCCCCCATCCCGGCCGAGGCGCGGGA CCCACAGGCCTTCCAGTACTGGACCGACATCGGCGAGGTGCGCCTGATCGTGCTGGACACGCTGGATACCGGCGCCCCCG GCGGCCGGCTCGGCGTGCCGCGGCTGGACTGGCTGCACGATGCGCTGGCGGCCGAGCCCGCGCGGCCGGTGGTGATTGCC ATGCATCACCCGCCGTTCGCCACCGGCATCGGCCACATGGACGTGCAGTCGCTGGCCGCTGAGGACATCCCCGCCTTCGC GCAGATCGTGCGCGCCGCCGGCAACGTCGAGCGCATCCTGTGCGGGCACCTGCACCGCGCCATCGACGTGCGCTTCGCGG GCACGGTGGCGTCGACCTGCCCGTCGCCGGCGCACCAGGTGGCGCTGGATCTCGATCCGGAGGGCGCGCCGGGCTTCGTC ATGGAGCCGCCCGCCTACCGGGTGCACGCCTGGGTGCCGGGGCTGGGCCTGGTGAGCCATCTGGCCTACGTGGGCACGTT CGACGGCCCGCACCCGTTCTTCGAGCCGGATGGGCGCCTGATCGATTGA
Upstream 100 bases:
>100_bases CGCCGCTGTTCATCGATGTGCCCGGCCGCCAGCAGTTCGCGCCGGGCCACGCGGTCGGCATCGAGATTGCCGCCGACCGC CTCCTGACCCTGCAAGCCTG
Downstream 100 bases:
>100_bases TGCAGGCCCTGGCCGGTGTCCACAGGCCACCGGCCATACCCGCGCCCGGGCTGGATCAAGGGCTTGCGCGCGGCGTGCTC GGCCGACTTCGAACTGCGTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 282; Mature: 282
Protein sequence:
>282_residues MHFLQLTDLHIKPPGRLAYRRVDTAAYLSRCVAHILAQPARPDAIVLTGDLVDAGAPDEYAHLRALLAPLDAAGIRMLPV LGNHDARAAAHEAFADWLAPIPAEARDPQAFQYWTDIGEVRLIVLDTLDTGAPGGRLGVPRLDWLHDALAAEPARPVVIA MHHPPFATGIGHMDVQSLAAEDIPAFAQIVRAAGNVERILCGHLHRAIDVRFAGTVASTCPSPAHQVALDLDPEGAPGFV MEPPAYRVHAWVPGLGLVSHLAYVGTFDGPHPFFEPDGRLID
Sequences:
>Translated_282_residues MHFLQLTDLHIKPPGRLAYRRVDTAAYLSRCVAHILAQPARPDAIVLTGDLVDAGAPDEYAHLRALLAPLDAAGIRMLPV LGNHDARAAAHEAFADWLAPIPAEARDPQAFQYWTDIGEVRLIVLDTLDTGAPGGRLGVPRLDWLHDALAAEPARPVVIA MHHPPFATGIGHMDVQSLAAEDIPAFAQIVRAAGNVERILCGHLHRAIDVRFAGTVASTCPSPAHQVALDLDPEGAPGFV MEPPAYRVHAWVPGLGLVSHLAYVGTFDGPHPFFEPDGRLID >Mature_282_residues MHFLQLTDLHIKPPGRLAYRRVDTAAYLSRCVAHILAQPARPDAIVLTGDLVDAGAPDEYAHLRALLAPLDAAGIRMLPV LGNHDARAAAHEAFADWLAPIPAEARDPQAFQYWTDIGEVRLIVLDTLDTGAPGGRLGVPRLDWLHDALAAEPARPVVIA MHHPPFATGIGHMDVQSLAAEDIPAFAQIVRAAGNVERILCGHLHRAIDVRFAGTVASTCPSPAHQVALDLDPEGAPGFV MEPPAYRVHAWVPGLGLVSHLAYVGTFDGPHPFFEPDGRLID
Specific function: Affects The Expression Of The Lacz Gene. [C]
COG id: COG1409
COG function: function code R; Predicted phosphohydrolases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli icc [H]
Homologues:
Organism=Escherichia coli, GI1789410, Length=224, Percent_Identity=29.4642857142857, Blast_Score=64, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013622 - InterPro: IPR004843 - ProDom: PD587589 [H]
Pfam domain/function: PF00149 Metallophos; PF08413 Metallophos_C [H]
EC number: NA
Molecular weight: Translated: 30300; Mature: 30300
Theoretical pI: Translated: 5.92; Mature: 5.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHFLQLTDLHIKPPGRLAYRRVDTAAYLSRCVAHILAQPARPDAIVLTGDLVDAGAPDEY CCEEEEECEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHH AHLRALLAPLDAAGIRMLPVLGNHDARAAAHEAFADWLAPIPAEARDPQAFQYWTDIGEV HHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCE RLIVLDTLDTGAPGGRLGVPRLDWLHDALAAEPARPVVIAMHHPPFATGIGHMDVQSLAA EEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHH EDIPAFAQIVRAAGNVERILCGHLHRAIDVRFAGTVASTCPSPAHQVALDLDPEGAPGFV HCCHHHHHHHHHCCCHHHHHHHHHHHHHEEEECCCHHHCCCCCCCEEEEEECCCCCCCCE MEPPAYRVHAWVPGLGLVSHLAYVGTFDGPHPFFEPDGRLID ECCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MHFLQLTDLHIKPPGRLAYRRVDTAAYLSRCVAHILAQPARPDAIVLTGDLVDAGAPDEY CCEEEEECEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHH AHLRALLAPLDAAGIRMLPVLGNHDARAAAHEAFADWLAPIPAEARDPQAFQYWTDIGEV HHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCE RLIVLDTLDTGAPGGRLGVPRLDWLHDALAAEPARPVVIAMHHPPFATGIGHMDVQSLAA EEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHH EDIPAFAQIVRAAGNVERILCGHLHRAIDVRFAGTVASTCPSPAHQVALDLDPEGAPGFV HCCHHHHHHHHHCCCHHHHHHHHHHHHHEEEECCCHHHCCCCCCCEEEEEECCCCCCCCE MEPPAYRVHAWVPGLGLVSHLAYVGTFDGPHPFFEPDGRLID ECCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]