| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is yceG [C]
Identifier: 17546502
GI number: 17546502
Start: 1918736
End: 1919869
Strand: Direct
Name: yceG [C]
Synonym: RSc1783
Alternate gene names: 17546502
Gene position: 1918736-1919869 (Clockwise)
Preceding gene: 17546498
Following gene: 17546503
Centisome position: 51.63
GC content: 68.25
Gene sequence:
>1134_bases ATGGTATGCAGGCGGCCGGAGATTGACCCGGTATTATATGGGGCTGTTCGGCGTGCATCTGGGGCGCGCTCAACCCTCTT TCAAGTGCGGGCAAGACCGGCGGAAGCCGGTTCCGTGGGCAACATCCGAATTTCGATGCTTTCTTTTCTCAAGCGCTTGC TGTTGCTGGCGATCCTGGTCGGGCTGGCCGCCGCGGGCGGCGTGGTGTGGTGGGCCCGGCAGCCGGTGAGCCTGTCGGCG TCGCCGCTGGAAGTGGTGATCAAGCCCAACTCGAGCGTACTCTCGGTCGCGCGGCAGCTCGAGCACGGCGGCGTGGACGT GCAGCCGCAGCTGTTTTCGCTGGTGGCGCGCGCCATGGGCAAGGCGACCAGCCTGAAGGCGGGCGGCTATGAGCTGGAAG CCGGCGCGACCCCGCTGTCGATCCTCGACAAGATGGCACGCGGCGAGGTCACGCACTACGTCGTCACCGTCATCGAGGGC TGGAGCATGCGCCAGATGCGCGCGGCGGTGGACGCCGAGCCGGCGCTGCGGCACGAGACCGCCGGCCTGCCGGACACCGA GCTGATGCGCCGGATCGGCGCGACCGAGGCCACGCCGGAGGGCCTGTTCTTCCCCGACACCTACCTGTTCGCGCGCGGCA GCAGCGACGTCGACCTGTTCCGCCATGCCTACCAGGCCATGCAGAAGCGCCTGGCCGAGGCGTGGGCCAGGCGCGCGCCG GGCCTGCCGTACAAGACGCCCTACGAGGCGCTGACCATGGCCTCCATCATCGAGAAGGAAACCGGCCAGAAGCGGGACCG CCCGATGGTGGCATCGGTGTTCGTCAACCGGCTGCGCAAGAACATGCTGCTGCAGACCGACCCGACCGTCATCTACGGCA TCGGCGCCGGCTTCGACGGCAACCTGCGCAAACGCGACCTGCAGACCGACACGCCGTACAACACCTACACCCGCATCGGC CTGCCGCCCACGCCGATCGCGCTGCCGGGCATGGCCTCGCTGGACGCGGCGATGAATCCGGCGCCGTCCGATGCGCTGTA CTTCGTCGCGCGCGGCGACGGCACCAGCCAGTTCTCGACCAACCTCACGGACCACAACCGGGCCGTCAACAAATACCAGC GCGGCCAACCATGA
Upstream 100 bases:
>100_bases GGTCGGCGCGCACAGCACGCTGCCTTGCGCGGCATGGGTGAACTGCACGTCGAGCGGGGGAAAGCTGAGCGTATCGACGA AATCCTGGAAGACGTCATTC
Downstream 100 bases:
>100_bases CCGGCAAGTTCATCACATTCGAAGGCATCGACGGCGCGGGCAAGAGCACGCACCTGGCGTGGTTCGCCCAGCAGCTCGAA GCGCGGCTGGCGCCGCAGGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 377; Mature: 377
Protein sequence:
>377_residues MVCRRPEIDPVLYGAVRRASGARSTLFQVRARPAEAGSVGNIRISMLSFLKRLLLLAILVGLAAAGGVVWWARQPVSLSA SPLEVVIKPNSSVLSVARQLEHGGVDVQPQLFSLVARAMGKATSLKAGGYELEAGATPLSILDKMARGEVTHYVVTVIEG WSMRQMRAAVDAEPALRHETAGLPDTELMRRIGATEATPEGLFFPDTYLFARGSSDVDLFRHAYQAMQKRLAEAWARRAP GLPYKTPYEALTMASIIEKETGQKRDRPMVASVFVNRLRKNMLLQTDPTVIYGIGAGFDGNLRKRDLQTDTPYNTYTRIG LPPTPIALPGMASLDAAMNPAPSDALYFVARGDGTSQFSTNLTDHNRAVNKYQRGQP
Sequences:
>Translated_377_residues MVCRRPEIDPVLYGAVRRASGARSTLFQVRARPAEAGSVGNIRISMLSFLKRLLLLAILVGLAAAGGVVWWARQPVSLSA SPLEVVIKPNSSVLSVARQLEHGGVDVQPQLFSLVARAMGKATSLKAGGYELEAGATPLSILDKMARGEVTHYVVTVIEG WSMRQMRAAVDAEPALRHETAGLPDTELMRRIGATEATPEGLFFPDTYLFARGSSDVDLFRHAYQAMQKRLAEAWARRAP GLPYKTPYEALTMASIIEKETGQKRDRPMVASVFVNRLRKNMLLQTDPTVIYGIGAGFDGNLRKRDLQTDTPYNTYTRIG LPPTPIALPGMASLDAAMNPAPSDALYFVARGDGTSQFSTNLTDHNRAVNKYQRGQP >Mature_377_residues MVCRRPEIDPVLYGAVRRASGARSTLFQVRARPAEAGSVGNIRISMLSFLKRLLLLAILVGLAAAGGVVWWARQPVSLSA SPLEVVIKPNSSVLSVARQLEHGGVDVQPQLFSLVARAMGKATSLKAGGYELEAGATPLSILDKMARGEVTHYVVTVIEG WSMRQMRAAVDAEPALRHETAGLPDTELMRRIGATEATPEGLFFPDTYLFARGSSDVDLFRHAYQAMQKRLAEAWARRAP GLPYKTPYEALTMASIIEKETGQKRDRPMVASVFVNRLRKNMLLQTDPTVIYGIGAGFDGNLRKRDLQTDTPYNTYTRIG LPPTPIALPGMASLDAAMNPAPSDALYFVARGDGTSQFSTNLTDHNRAVNKYQRGQP
Specific function: Unknown
COG id: COG1559
COG function: function code R; Predicted periplasmic solute-binding protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0755 family [H]
Homologues:
Organism=Escherichia coli, GI1787339, Length=319, Percent_Identity=39.1849529780564, Blast_Score=207, Evalue=1e-54,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003770 [H]
Pfam domain/function: PF02618 ADC_lyase [H]
EC number: NA
Molecular weight: Translated: 41124; Mature: 41124
Theoretical pI: Translated: 10.18; Mature: 10.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVCRRPEIDPVLYGAVRRASGARSTLFQVRARPAEAGSVGNIRISMLSFLKRLLLLAILV CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH GLAAAGGVVWWARQPVSLSASPLEVVIKPNSSVLSVARQLEHGGVDVQPQLFSLVARAMG HHHHCCCEEEEECCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC KATSLKAGGYELEAGATPLSILDKMARGEVTHYVVTVIEGWSMRQMRAAVDAEPALRHET CCCEECCCCEEECCCCCHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHC AGLPDTELMRRIGATEATPEGLFFPDTYLFARGSSDVDLFRHAYQAMQKRLAEAWARRAP CCCCHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCC GLPYKTPYEALTMASIIEKETGQKRDRPMVASVFVNRLRKNMLLQTDPTVIYGIGAGFDG CCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCEEECCCCEEEEECCCCCC NLRKRDLQTDTPYNTYTRIGLPPTPIALPGMASLDAAMNPAPSDALYFVARGDGTSQFST CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHCCCCCCCEEEEEEECCCCCHHCC NLTDHNRAVNKYQRGQP CCCHHHHHHHHHHCCCC >Mature Secondary Structure MVCRRPEIDPVLYGAVRRASGARSTLFQVRARPAEAGSVGNIRISMLSFLKRLLLLAILV CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH GLAAAGGVVWWARQPVSLSASPLEVVIKPNSSVLSVARQLEHGGVDVQPQLFSLVARAMG HHHHCCCEEEEECCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC KATSLKAGGYELEAGATPLSILDKMARGEVTHYVVTVIEGWSMRQMRAAVDAEPALRHET CCCEECCCCEEECCCCCHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHC AGLPDTELMRRIGATEATPEGLFFPDTYLFARGSSDVDLFRHAYQAMQKRLAEAWARRAP CCCCHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCC GLPYKTPYEALTMASIIEKETGQKRDRPMVASVFVNRLRKNMLLQTDPTVIYGIGAGFDG CCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCEEECCCCEEEEECCCCCC NLRKRDLQTDTPYNTYTRIGLPPTPIALPGMASLDAAMNPAPSDALYFVARGDGTSQFST CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHCCCCCCCEEEEEEECCCCCHHCC NLTDHNRAVNKYQRGQP CCCHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]