Click here to switch to the map view.

The map label for this gene is omp32 [H]

Identifier: 17546456

GI number: 17546456

Start: 1859247

End: 1860308

Strand: Direct

Name: omp32 [H]

Synonym: RSc1737

Alternate gene names: 17546456

Gene position: 1859247-1860308 (Clockwise)

Preceding gene: 17546449

Following gene: 17546468

Centisome position: 50.03

GC content: 69.02

Gene sequence:

>1062_bases
ATGAAAATCACCTCGATGGCGCTGGCGGCGGCCGCGCTGGCGACCGCCGGCACCGCGGCGGCCCAATCCAACGTGACCCT
GTACGGCATCATGGATGCCGGCATCGAATACGTGAACCACGCCGGCGCCAACGGCGGCGGCGCGGCCCGCCTGGTGTCGG
GCGGCAAGAACACCTCGCGCTGGGGCCTGCGCGGCAGCGAAGACCTGGGCGGCGGGCTGAAGGGCATCTTCAACCTCGAG
AGCGGCATCGCCATCGACACCGGCCGGCTCGACACCGACAACACGCTGTTCGACCGCCGCGCCGTGGTCGGGCTGGCGGG
CAGCTTCGGCCAGGTGGTGTTCGGCCGCACCTTCACCACCACCTACGACTTCATGCTGCCCTACGACCCGATGGGCTATG
CGCCCAACTACTCGTGGGCGACCTCGTCGACGGCCACCGGCGACCGCAAGGACGGCCTGTTCTCGCGCGCCTCCAACGCG
GTGCGCTACGACGGCACCTTCGGCGGCCTGAAGCTCGGCGCCACGGTCGGTTTTGGCGAGGTGGCGGGCAACTTCAATAG
CTCGTCCAAGTATGACGTGGGCATCGGCTACAGCGCGGGCGGCTTCTCGGCGGCCGCCACGTGGGACCGCCAGAACGGCG
CCGGCACGAGCACCACGCCGGCCGACACCACCGACTACATCCAGGGCATCCACGCCGGCGCCAGCTATGACTTCGGCGCG
CTCAAGCTGTTCGCGGGCTACCGCAACTACAAGCGCGCCTTCACCACGGCCGCGGCCACGCAGCGCAGCGATATGTACTG
GGCCGGCGCCAGCTACGATTTCACGCCGGCGTTCACGCTGTTCGGCGCGGTCTACAAGCAGAACATCAAGGGCGGCACCG
ATGCCGACCCGATCCTGTTCTCGCTGCGCGCGCAATACGCCTTGTCCAAGCGCACCACGGCCTACCTGGCCGGCGGCTAC
GCCAAGGCGAGGAACGGCCAGAACGTAAGCCTGTCGCGCGATGTGGCCGGCTTCGGCAACAGCCAGGTCGGCGTGACGGC
GGGCCTGCAGCACCGCTTCTGA

Upstream 100 bases:

>100_bases
CGGCGCAAATGGCGGCCGATCGAAAGTGAACTGAAAGTGCGCCTCTTCTACGATGCCTGGCGCTGCGCAAGCGCGGCAGA
ACAATCACAAGGGAGACCCG

Downstream 100 bases:

>100_bases
TCGCACCGCTGCCGGGGTAGCCCGGCACAACGACAACGGGCACCCGAAGGTGCCCGTTTTTCATGGTGCGTGCCGGATCA
GCCCAGCAGCAGCGCGTCGT

Product: transmembrane outer membrane porin signal peptide protein

Products: NA

Alternate protein names: OMP32 [H]

Number of amino acids: Translated: 353; Mature: 353

Protein sequence:

>353_residues
MKITSMALAAAALATAGTAAAQSNVTLYGIMDAGIEYVNHAGANGGGAARLVSGGKNTSRWGLRGSEDLGGGLKGIFNLE
SGIAIDTGRLDTDNTLFDRRAVVGLAGSFGQVVFGRTFTTTYDFMLPYDPMGYAPNYSWATSSTATGDRKDGLFSRASNA
VRYDGTFGGLKLGATVGFGEVAGNFNSSSKYDVGIGYSAGGFSAAATWDRQNGAGTSTTPADTTDYIQGIHAGASYDFGA
LKLFAGYRNYKRAFTTAAATQRSDMYWAGASYDFTPAFTLFGAVYKQNIKGGTDADPILFSLRAQYALSKRTTAYLAGGY
AKARNGQNVSLSRDVAGFGNSQVGVTAGLQHRF

Sequences:

>Translated_353_residues
MKITSMALAAAALATAGTAAAQSNVTLYGIMDAGIEYVNHAGANGGGAARLVSGGKNTSRWGLRGSEDLGGGLKGIFNLE
SGIAIDTGRLDTDNTLFDRRAVVGLAGSFGQVVFGRTFTTTYDFMLPYDPMGYAPNYSWATSSTATGDRKDGLFSRASNA
VRYDGTFGGLKLGATVGFGEVAGNFNSSSKYDVGIGYSAGGFSAAATWDRQNGAGTSTTPADTTDYIQGIHAGASYDFGA
LKLFAGYRNYKRAFTTAAATQRSDMYWAGASYDFTPAFTLFGAVYKQNIKGGTDADPILFSLRAQYALSKRTTAYLAGGY
AKARNGQNVSLSRDVAGFGNSQVGVTAGLQHRF
>Mature_353_residues
MKITSMALAAAALATAGTAAAQSNVTLYGIMDAGIEYVNHAGANGGGAARLVSGGKNTSRWGLRGSEDLGGGLKGIFNLE
SGIAIDTGRLDTDNTLFDRRAVVGLAGSFGQVVFGRTFTTTYDFMLPYDPMGYAPNYSWATSSTATGDRKDGLFSRASNA
VRYDGTFGGLKLGATVGFGEVAGNFNSSSKYDVGIGYSAGGFSAAATWDRQNGAGTSTTPADTTDYIQGIHAGASYDFGA
LKLFAGYRNYKRAFTTAAATQRSDMYWAGASYDFTPAFTLFGAVYKQNIKGGTDADPILFSLRAQYALSKRTTAYLAGGY
AKARNGQNVSLSRDVAGFGNSQVGVTAGLQHRF

Specific function: Forms anion selective channels [H]

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To bacterial outer membrane proteins and porins [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001702
- InterPro:   IPR002299 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 36843; Mature: 36843

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKITSMALAAAALATAGTAAAQSNVTLYGIMDAGIEYVNHAGANGGGAARLVSGGKNTSR
CCCHHHHHHHHHHHHCCCHHHCCCEEEEEEHHHHHHHHHHCCCCCCCEEEEECCCCCCCC
WGLRGSEDLGGGLKGIFNLESGIAIDTGRLDTDNTLFDRRAVVGLAGSFGQVVFGRTFTT
CCCCCCHHCCCCHHEEEECCCCCEEECCCCCCCCCHHHHHHEEEECCCCCCEEECCEEEE
TYDFMLPYDPMGYAPNYSWATSSTATGDRKDGLFSRASNAVRYDGTFGGLKLGATVGFGE
EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEECCCCCCEEEEEEECHHH
VAGNFNSSSKYDVGIGYSAGGFSAAATWDRQNGAGTSTTPADTTDYIQGIHAGASYDFGA
HCCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHH
LKLFAGYRNYKRAFTTAAATQRSDMYWAGASYDFTPAFTLFGAVYKQNIKGGTDADPILF
HHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHH
SLRAQYALSKRTTAYLAGGYAKARNGQNVSLSRDVAGFGNSQVGVTAGLQHRF
HHHHHHHHHHCCEEEEECCCCCCCCCCCEEEECCCCCCCCCCCEEECCCCCCC
>Mature Secondary Structure
MKITSMALAAAALATAGTAAAQSNVTLYGIMDAGIEYVNHAGANGGGAARLVSGGKNTSR
CCCHHHHHHHHHHHHCCCHHHCCCEEEEEEHHHHHHHHHHCCCCCCCEEEEECCCCCCCC
WGLRGSEDLGGGLKGIFNLESGIAIDTGRLDTDNTLFDRRAVVGLAGSFGQVVFGRTFTT
CCCCCCHHCCCCHHEEEECCCCCEEECCCCCCCCCHHHHHHEEEECCCCCCEEECCEEEE
TYDFMLPYDPMGYAPNYSWATSSTATGDRKDGLFSRASNAVRYDGTFGGLKLGATVGFGE
EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEECCCCCCEEEEEEECHHH
VAGNFNSSSKYDVGIGYSAGGFSAAATWDRQNGAGTSTTPADTTDYIQGIHAGASYDFGA
HCCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHH
LKLFAGYRNYKRAFTTAAATQRSDMYWAGASYDFTPAFTLFGAVYKQNIKGGTDADPILF
HHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHH
SLRAQYALSKRTTAYLAGGYAKARNGQNVSLSRDVAGFGNSQVGVTAGLQHRF
HHHHHHHHHHCCEEEEECCCCCCCCCCCEEEECCCCCCCCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1848840 [H]