Definition | Ralstonia solanacearum GMI1000, complete genome. |
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Accession | NC_003295 |
Length | 3,716,413 |
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The map label for this gene is 17546369
Identifier: 17546369
GI number: 17546369
Start: 1773374
End: 1774990
Strand: Direct
Name: 17546369
Synonym: RSc1650
Alternate gene names: NA
Gene position: 1773374-1774990 (Clockwise)
Preceding gene: 17546368
Following gene: 17546370
Centisome position: 47.72
GC content: 67.47
Gene sequence:
>1617_bases ATGCGAATTTCTGGCTGGACGACGATTCCGATGGCGCTGGCGGTGGCCGGCGTTCTGGCCCACCTGCAGGCGCAGGCGCA GGTTCCAGCGCGGCACGAGCACCGGGCCAGCCGCGCCACGGCGCAGGCCGTCGAGGCGCAGCGCCTGGACCGTGACGACG CGCGCTTCTTCCTGACCCGCACCGGTTTCTCGCCCACGGAGAGCGAGCTCGACGCCTACGCCGGCCTGACCCGCCGCGAG GCCGTCGACCGCGTGCTGGCCCAGACCGGCACCGTCGCCACCCAGCCGTTGCCGGCATGGATCAACGAGCCGATCGTCAC GGACGACAAGCAGGCTAATGACGAGGCTCGCAAGGTGGCCCGGCAGAAGAATCTCGCGCGGGAACTCGAAATGCGCGGCT GGTGGATCAGCGAGATGATCAGGACGCCGTCCCCGCTGACCGAGCGGATGACGCTGTTCTGGCACAACCATTTCGTATCC AGCTCGCAGAAGGTGGTGTTCGCGCAGCTGATGTATCGGCAGAACGTGCTGCTACGGCAGAACGCGGTCGGCAACTTCGG GACGATGCTGCATGCCGTCAGCAAGGACCCGGCGATGCTGGTCTACCTGGATGCCGCCTCGAGCCGCAAGGGCAAGCCCA ACGAGAACTTCGCCCGCGAAGTGATGGAGCTCTTCACACTGGGCGAGGGCCACTACACCGAACAAGACATCAAGGAAGCC GCGCGCGCCTACACCGGCTGGAGCGTGGACCGCGAGCACGACTACGCCTATGTCTGGCTGCCGCAGCTGCATGACACCGG CACCAAGACGGTGTTCGGCCGCAGCGGCGACTACGACGGCGACCAGATGCTCGATGTCCTGCTGGCGCGGCAGGAAACCG CCGTGTTCATCGTGACCAAGCTGTGGCGCGAGTTCGTCTCGCCCGATCCGGACGCGGCGCAGGTCGCGCACGTCGCCGAG GCCTTCCGCTCCAGCGGCTACGACATCAAGGTGGCGCTGCGCGAGCTCTTCATGACGCAGGCGTTCTGGGCGCCGCAGAC GCGCGCGACGCTGGTGAAGTCGCCGGTGGAGATGATCGTCGGTACGCTCAAGCAGTTCAACGTGCAGTATTCGGACCCGG CGCCGTTCGCGATCAAGTCCGCGCAGCTGGGGCAGAACCTGTTCGCCCCGCCCAACGTGAAGGGCTGGCCGGGCGGCGAT GCGTGGATCAACTCCAACACGCTGCTGGGCCGCAAGCAGTTCCTCGACCAGCTGTTTCGCTCCACCGAGATGAAGGCGCC GCCGGCGCAGGCGCAGAAGCCCGGCGTGATGATGGCGGCCATGCGCGAGGACCTGAAGCAGGGCGGCCCCGTGCCGGGCC TGGGCGCGGCGTTGAAGGGCATGGGCCCGGAGGGCCGCTTCAAGCTGGCGCAGTCGCAGACCATGGTGTCGTTCAATGCG GCCAGGTGGCTGGCCCAGTTCGGCGCCGAGGCCAACGATCCGCCCCAGCTGGGGCCGCGCCTGTCCATCCAGCATGCCGT GCTGCCGGTCGACCCCACGGTGCCGATTCCCGTCAAGCTGGCCGGTGCCGCTTATCTGCGCACGCTGTTGATGGATCCGG CCTATCAACTCAAGTGA
Upstream 100 bases:
>100_bases CGCGCGATATCTATCACCGTGGCGGTTAGTCGGGCGCTTGGCCGCCGTGCATCGTCACGGCATCCGGCCGATGCGTCCGG GGTCGAAGTAGGGGACGGAT
Downstream 100 bases:
>100_bases CCCTCACCCCAAGCGTCGGAGGACATCATGGAACGTCGCGATTTTCTGAAAGCGGGTGCGATGCTCGGCATGGGTGGCGC GCTGCCGGGCGTTGTCTTTG
Product: signal peptide protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 538; Mature: 538
Protein sequence:
>538_residues MRISGWTTIPMALAVAGVLAHLQAQAQVPARHEHRASRATAQAVEAQRLDRDDARFFLTRTGFSPTESELDAYAGLTRRE AVDRVLAQTGTVATQPLPAWINEPIVTDDKQANDEARKVARQKNLARELEMRGWWISEMIRTPSPLTERMTLFWHNHFVS SSQKVVFAQLMYRQNVLLRQNAVGNFGTMLHAVSKDPAMLVYLDAASSRKGKPNENFAREVMELFTLGEGHYTEQDIKEA ARAYTGWSVDREHDYAYVWLPQLHDTGTKTVFGRSGDYDGDQMLDVLLARQETAVFIVTKLWREFVSPDPDAAQVAHVAE AFRSSGYDIKVALRELFMTQAFWAPQTRATLVKSPVEMIVGTLKQFNVQYSDPAPFAIKSAQLGQNLFAPPNVKGWPGGD AWINSNTLLGRKQFLDQLFRSTEMKAPPAQAQKPGVMMAAMREDLKQGGPVPGLGAALKGMGPEGRFKLAQSQTMVSFNA ARWLAQFGAEANDPPQLGPRLSIQHAVLPVDPTVPIPVKLAGAAYLRTLLMDPAYQLK
Sequences:
>Translated_538_residues MRISGWTTIPMALAVAGVLAHLQAQAQVPARHEHRASRATAQAVEAQRLDRDDARFFLTRTGFSPTESELDAYAGLTRRE AVDRVLAQTGTVATQPLPAWINEPIVTDDKQANDEARKVARQKNLARELEMRGWWISEMIRTPSPLTERMTLFWHNHFVS SSQKVVFAQLMYRQNVLLRQNAVGNFGTMLHAVSKDPAMLVYLDAASSRKGKPNENFAREVMELFTLGEGHYTEQDIKEA ARAYTGWSVDREHDYAYVWLPQLHDTGTKTVFGRSGDYDGDQMLDVLLARQETAVFIVTKLWREFVSPDPDAAQVAHVAE AFRSSGYDIKVALRELFMTQAFWAPQTRATLVKSPVEMIVGTLKQFNVQYSDPAPFAIKSAQLGQNLFAPPNVKGWPGGD AWINSNTLLGRKQFLDQLFRSTEMKAPPAQAQKPGVMMAAMREDLKQGGPVPGLGAALKGMGPEGRFKLAQSQTMVSFNA ARWLAQFGAEANDPPQLGPRLSIQHAVLPVDPTVPIPVKLAGAAYLRTLLMDPAYQLK >Mature_538_residues MRISGWTTIPMALAVAGVLAHLQAQAQVPARHEHRASRATAQAVEAQRLDRDDARFFLTRTGFSPTESELDAYAGLTRRE AVDRVLAQTGTVATQPLPAWINEPIVTDDKQANDEARKVARQKNLARELEMRGWWISEMIRTPSPLTERMTLFWHNHFVS SSQKVVFAQLMYRQNVLLRQNAVGNFGTMLHAVSKDPAMLVYLDAASSRKGKPNENFAREVMELFTLGEGHYTEQDIKEA ARAYTGWSVDREHDYAYVWLPQLHDTGTKTVFGRSGDYDGDQMLDVLLARQETAVFIVTKLWREFVSPDPDAAQVAHVAE AFRSSGYDIKVALRELFMTQAFWAPQTRATLVKSPVEMIVGTLKQFNVQYSDPAPFAIKSAQLGQNLFAPPNVKGWPGGD AWINSNTLLGRKQFLDQLFRSTEMKAPPAQAQKPGVMMAAMREDLKQGGPVPGLGAALKGMGPEGRFKLAQSQTMVSFNA ARWLAQFGAEANDPPQLGPRLSIQHAVLPVDPTVPIPVKLAGAAYLRTLLMDPAYQLK
Specific function: Unknown
COG id: COG5267
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 59783; Mature: 59783
Theoretical pI: Translated: 9.44; Mature: 9.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRISGWTTIPMALAVAGVLAHLQAQAQVPARHEHRASRATAQAVEAQRLDRDDARFFLTR CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE TGFSPTESELDAYAGLTRREAVDRVLAQTGTVATQPLPAWINEPIVTDDKQANDEARKVA CCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHH RQKNLARELEMRGWWISEMIRTPSPLTERMTLFWHNHFVSSSQKVVFAQLMYRQNVLLRQ HHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH NAVGNFGTMLHAVSKDPAMLVYLDAASSRKGKPNENFAREVMELFTLGEGHYTEQDIKEA CCCCCHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHH ARAYTGWSVDREHDYAYVWLPQLHDTGTKTVFGRSGDYDGDQMLDVLLARQETAVFIVTK HHHHCCCCCCCCCCEEEEEECCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCHHHHHHHH LWREFVSPDPDAAQVAHVAEAFRSSGYDIKVALRELFMTQAFWAPQTRATLVKSPVEMIV HHHHHCCCCCCHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH GTLKQFNVQYSDPAPFAIKSAQLGQNLFAPPNVKGWPGGDAWINSNTLLGRKQFLDQLFR HHHHHCCCCCCCCCCCEEEHHHHCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHH STEMKAPPAQAQKPGVMMAAMREDLKQGGPVPGLGAALKGMGPEGRFKLAQSQTMVSFNA HCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCEEECCCCHHHHHHH ARWLAQFGAEANDPPQLGPRLSIQHAVLPVDPTVPIPVKLAGAAYLRTLLMDPAYQLK HHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MRISGWTTIPMALAVAGVLAHLQAQAQVPARHEHRASRATAQAVEAQRLDRDDARFFLTR CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE TGFSPTESELDAYAGLTRREAVDRVLAQTGTVATQPLPAWINEPIVTDDKQANDEARKVA CCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHH RQKNLARELEMRGWWISEMIRTPSPLTERMTLFWHNHFVSSSQKVVFAQLMYRQNVLLRQ HHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH NAVGNFGTMLHAVSKDPAMLVYLDAASSRKGKPNENFAREVMELFTLGEGHYTEQDIKEA CCCCCHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHH ARAYTGWSVDREHDYAYVWLPQLHDTGTKTVFGRSGDYDGDQMLDVLLARQETAVFIVTK HHHHCCCCCCCCCCEEEEEECCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCHHHHHHHH LWREFVSPDPDAAQVAHVAEAFRSSGYDIKVALRELFMTQAFWAPQTRATLVKSPVEMIV HHHHHCCCCCCHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH GTLKQFNVQYSDPAPFAIKSAQLGQNLFAPPNVKGWPGGDAWINSNTLLGRKQFLDQLFR HHHHHCCCCCCCCCCCEEEHHHHCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHH STEMKAPPAQAQKPGVMMAAMREDLKQGGPVPGLGAALKGMGPEGRFKLAQSQTMVSFNA HCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCEEECCCCHHHHHHH ARWLAQFGAEANDPPQLGPRLSIQHAVLPVDPTVPIPVKLAGAAYLRTLLMDPAYQLK HHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA