Definition | Ralstonia solanacearum GMI1000, complete genome. |
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Accession | NC_003295 |
Length | 3,716,413 |
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The map label for this gene is 17546370
Identifier: 17546370
GI number: 17546370
Start: 1775018
End: 1776202
Strand: Direct
Name: 17546370
Synonym: RSc1651
Alternate gene names: NA
Gene position: 1775018-1776202 (Clockwise)
Preceding gene: 17546369
Following gene: 17546372
Centisome position: 47.76
GC content: 68.69
Gene sequence:
>1185_bases ATGGAACGTCGCGATTTTCTGAAAGCGGGTGCGATGCTCGGCATGGGTGGCGCGCTGCCGGGCGTTGTCTTTGCGCAAGG GCGGGGCAAGCGCAATGGGTACGGCAACCTGCTGATCCTGATCGAGCTCAAGGGCGGCAATGACGGGCTCAACACCGTGG TCCCGTATACCAGCGCGCAGTACTACGCGCTGCGCCCGCGCATCGCCATCAAGCGCGAGCAGGTGCTGCAGCTCGACGAT CGCTATGGCCTGCATCCGTCCCTGCAGCCGCTGATGCCGCTGTGGCAGGCGGGCGAGCTCTCGGTGGTGCAGGGGCTGTC GTATCCGCAGCCCAATCTGTCGCATTTCCGCTCCATCGAGATCTGGGACACCGCCTCGCGCGCCGACCAGTATCTGCACG AAGGGTGGCTGACGCGGGCGTTCGCAGCCCGGCCGGTGCCCGCCTCGTTCGGCGCGGATGGCGTCATCATCGGCAGCGCG GATCTCGGCCCGCTGGACGGCGGCGCCCGCGCCGTGGCGCTGGCCAGCCCGGATGCCTTCCTCAACGAAGCCAGGCTGGC GATGCCGTCGAACGCCACGGGCAATGCAACGCTCGCGCACGTGCTGAAGGTCGAGGCGGACATCGTCAAGGCTGCCGATG GCCTGCGTCCCAAGGGCGGCAAGTTCGACTTCAAGACGCGCTTTTCGGAGACCGCCTTCGGCAACGCCATCAAGGCCGCC ATGCAGGTGGTGGCGGCCCCCGGGCGCGGCGGCTCGGATGTGGCGGCGGTGTGCCTGTCGCTGGGCAGTTTCGATACCCA CACCAACCAGCTGGTGGCGCAGAACAACCTGCTGCGGCAGCTCGGCGATGGCATCGCGACGCTCAAGAGCGCGCTGACGG AGCTCGGGCGCTGGGACGATACGCTGATCGTCACCTACTCCGAATTCGGCCGCCGCCCGCGCGAGAACCTGAACAACGGC ACCGACCACGGCACTGCCTCCGCGCATTTCGTGGCGGGCGGGCGGGCCAAGGGCGGGCTGGCCGGGCAGGGGCCGGTGCT CGAGCGGCTGGACGGCAGCGGCAACCTGGAGCCGTCGGTCGATTTCCGCTCGCTCTACGCGACCGTGCTGGAGCGCTGGT GGGGCATGGATTCGCGGTCGGTGCTGGCTGGCCGCTTCGCCCCGCTGGATCTGATCAAGGCCTGA
Upstream 100 bases:
>100_bases GATTCCCGTCAAGCTGGCCGGTGCCGCTTATCTGCGCACGCTGTTGATGGATCCGGCCTATCAACTCAAGTGACCCTCAC CCCAAGCGTCGGAGGACATC
Downstream 100 bases:
>100_bases TCAGGCGCGGAGCTGGGTCTTCCAGGCCAGCCACAGCTTGCGTAGCGGCGTCAGGTCGGTGCGCTGGGTCAGCACCTGGA AGCCGTCGGCCTCGAGTTCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 394; Mature: 394
Protein sequence:
>394_residues MERRDFLKAGAMLGMGGALPGVVFAQGRGKRNGYGNLLILIELKGGNDGLNTVVPYTSAQYYALRPRIAIKREQVLQLDD RYGLHPSLQPLMPLWQAGELSVVQGLSYPQPNLSHFRSIEIWDTASRADQYLHEGWLTRAFAARPVPASFGADGVIIGSA DLGPLDGGARAVALASPDAFLNEARLAMPSNATGNATLAHVLKVEADIVKAADGLRPKGGKFDFKTRFSETAFGNAIKAA MQVVAAPGRGGSDVAAVCLSLGSFDTHTNQLVAQNNLLRQLGDGIATLKSALTELGRWDDTLIVTYSEFGRRPRENLNNG TDHGTASAHFVAGGRAKGGLAGQGPVLERLDGSGNLEPSVDFRSLYATVLERWWGMDSRSVLAGRFAPLDLIKA
Sequences:
>Translated_394_residues MERRDFLKAGAMLGMGGALPGVVFAQGRGKRNGYGNLLILIELKGGNDGLNTVVPYTSAQYYALRPRIAIKREQVLQLDD RYGLHPSLQPLMPLWQAGELSVVQGLSYPQPNLSHFRSIEIWDTASRADQYLHEGWLTRAFAARPVPASFGADGVIIGSA DLGPLDGGARAVALASPDAFLNEARLAMPSNATGNATLAHVLKVEADIVKAADGLRPKGGKFDFKTRFSETAFGNAIKAA MQVVAAPGRGGSDVAAVCLSLGSFDTHTNQLVAQNNLLRQLGDGIATLKSALTELGRWDDTLIVTYSEFGRRPRENLNNG TDHGTASAHFVAGGRAKGGLAGQGPVLERLDGSGNLEPSVDFRSLYATVLERWWGMDSRSVLAGRFAPLDLIKA >Mature_394_residues MERRDFLKAGAMLGMGGALPGVVFAQGRGKRNGYGNLLILIELKGGNDGLNTVVPYTSAQYYALRPRIAIKREQVLQLDD RYGLHPSLQPLMPLWQAGELSVVQGLSYPQPNLSHFRSIEIWDTASRADQYLHEGWLTRAFAARPVPASFGADGVIIGSA DLGPLDGGARAVALASPDAFLNEARLAMPSNATGNATLAHVLKVEADIVKAADGLRPKGGKFDFKTRFSETAFGNAIKAA MQVVAAPGRGGSDVAAVCLSLGSFDTHTNQLVAQNNLLRQLGDGIATLKSALTELGRWDDTLIVTYSEFGRRPRENLNNG TDHGTASAHFVAGGRAKGGLAGQGPVLERLDGSGNLEPSVDFRSLYATVLERWWGMDSRSVLAGRFAPLDLIKA
Specific function: Unknown
COG id: COG4102
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42049; Mature: 42049
Theoretical pI: Translated: 9.21; Mature: 9.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MERRDFLKAGAMLGMGGALPGVVFAQGRGKRNGYGNLLILIELKGGNDGLNTVVPYTSAQ CCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCEEEEEEECCCCCCCCCEECCCCCE YYALRPRIAIKREQVLQLDDRYGLHPSLQPLMPLWQAGELSVVQGLSYPQPNLSHFRSIE EEEECCCHHCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHHCCCCCCCCHHHHEEEE IWDTASRADQYLHEGWLTRAFAARPVPASFGADGVIIGSADLGPLDGGARAVALASPDAF EECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEECCHHH LNEARLAMPSNATGNATLAHVLKVEADIVKAADGLRPKGGKFDFKTRFSETAFGNAIKAA HHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCHHHHHHHHHHH MQVVAAPGRGGSDVAAVCLSLGSFDTHTNQLVAQNNLLRQLGDGIATLKSALTELGRWDD HHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC TLIVTYSEFGRRPRENLNNGTDHGTASAHFVAGGRAKGGLAGQGPVLERLDGSGNLEPSV EEEEEEHHHCCCCHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCC DFRSLYATVLERWWGMDSRSVLAGRFAPLDLIKA HHHHHHHHHHHHHHCCCCCCCHHCCCCCHHHHCC >Mature Secondary Structure MERRDFLKAGAMLGMGGALPGVVFAQGRGKRNGYGNLLILIELKGGNDGLNTVVPYTSAQ CCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCEEEEEEECCCCCCCCCEECCCCCE YYALRPRIAIKREQVLQLDDRYGLHPSLQPLMPLWQAGELSVVQGLSYPQPNLSHFRSIE EEEECCCHHCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHHCCCCCCCCHHHHEEEE IWDTASRADQYLHEGWLTRAFAARPVPASFGADGVIIGSADLGPLDGGARAVALASPDAF EECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEECCHHH LNEARLAMPSNATGNATLAHVLKVEADIVKAADGLRPKGGKFDFKTRFSETAFGNAIKAA HHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCHHHHHHHHHHH MQVVAAPGRGGSDVAAVCLSLGSFDTHTNQLVAQNNLLRQLGDGIATLKSALTELGRWDD HHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC TLIVTYSEFGRRPRENLNNGTDHGTASAHFVAGGRAKGGLAGQGPVLERLDGSGNLEPSV EEEEEEHHHCCCCHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCC DFRSLYATVLERWWGMDSRSVLAGRFAPLDLIKA HHHHHHHHHHHHHHCCCCCCCHHCCCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA