| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is relA [H]
Identifier: 17546295
GI number: 17546295
Start: 1689822
End: 1692062
Strand: Direct
Name: relA [H]
Synonym: RSc1576
Alternate gene names: 17546295
Gene position: 1689822-1692062 (Clockwise)
Preceding gene: 17546294
Following gene: 17546296
Centisome position: 45.47
GC content: 68.18
Gene sequence:
>2241_bases ATGAACAGCAAGACCGACCGTCCGGCAGAGGGCGCCGGCGCGACGGCCGACAGGGCGGCGCGCGAGGCGGCCGTCGCGCG CGCGCTCGAATGCCTGGCCGACCATGCCGGCGACCACCAGACGCTGACCGGCGAGCCGCTGGTGTCGCACGCGCGCGGCA CGGTGGCGATCCTCGAGGGGCTGCGCGTCGACGCGCCGTCGTTGCAGGCGGCGGCGCTGTTCCTGCTGCCGATCCTGGCC ACCGACAACGAGAAGGCGATCGAGCCGGCGTTCGGCGGCGAGGTGGCCCGGCTGGTGCACGACGTGCGGCAGCTGCTGCG CATCGGCGCGATCGCCGGCATGGCCAGCCCGGCCGAGGCGGGCGTCACCCGCAAGAACGAAGCCGAGGCGCGCCGCGCCC AGGTCGAGGCGCTGCGCAAGATGCTGCTGGCCTTCGCGCAGGACATCCGCGTGGTGCTGATCCGCCTGGCGTCGCGGCTG CAGTCGCTGCGCTGGCTGGCCCAGAACAAGCTGCCCGCCCCTGAGGGCATGGCGCGCGAGACGCTCGACATCTACGCGCC GCTCGCCAACCGGCTCGGCATCTGGCAGCTGAAGTGGGAGCTCGAAGACCTGGGCTTCCGCTTCGAAGACCCCGATACCT ACAAGCGCATCGCGCGCCTGCTGGACGAAAAGCGCATCGAGCGCGAGCAGTTCATCGGCGAGGCGATCGCCAGGCTGCAG CAGACACTGCGCGACGCGGGCATCCACGCCGAGGTCAGCGGCCGCCCCAAGCACATCTACAGCATCTGGCGGAAGATGCG CGGCAAGGACCTCGACTTCGCCGATCTGTACGATGTGCGCGCCTTCCGCGTCATCGTCGACGACATCAAGGACTGCTACA CCGTGCTCGGCTTCGTGCACCACATGTGGCAGCCGATCCCGAAGGAGTTCGACGACTACATCTCGCGTCCCAAGACCAAT GGCTACAAGTCGCTGCACACGGTGGTGATCGGTGACGACGGCCGCGCGCTGGAGGTGCAGATCCGCACGCGCGAAATGCA CCACTTCGCCGAATACGGCGTGGCCGCGCACTGGCGCTACAAGGAGGCCGGCAGCAAGGGCTACGCCGGCCAGTTCTCCG CCAGCGAGCGCTACGACGAGAAGATCGCCTGGCTGCGCCAGCTGCTGGCCTGGAAGGACGATGCCGAGCACACCGTCGCC CAGGAAGACTCGCCGTGGGAGCAGCTCAAGCATACCGAGCTCGATGACCACATCTACGTGCTGACGCCGCAGGCGCGCGT GATCGCGCTGCCGCAGGGCGCCACGCCGGTCGATTTCGCGTACTACCTGCACAGCGATCTCGGCCACCGGTGCCGCGGCG CGCGCGTCGACGGCACGATGGTGCCGCTGAACACGCCGCTCAAGAACGGGCAGACGGTCGAGATCGTCACCGTCAAGCAG GGTGGGCCGTCGCGCGACTGGCTCAACCCCGAACTGCACTATCTGGCGAGCAATCGGGCCCGTGCCAAGGTGCGCGCGTG GTTCAACGCGCTGGAATTGGAAGAAACGCTCGCCCAGGGCCGCATCCTGATCGACAAGACCTTGCAGCGCGAAGGCAAGA CCGCCGTCAACCTGGAGGAGCTCGCCGCCAAGCTGGGCTTCAAGACGCCGGACGAGCTGTACGCCATGGTGGCCAAGGAT GAGTTCAGCTTGCGCCACGTCGAGGCGGTGCTGCGCACGGATGGCGCGCCGCCCGCGCCGGCCGACGACGAGGCGTCGAT CACCAAGAAGAGCCGCGCCACCAGCGTGGCCCGCGGCGCCAAGAGCGGCGTGCTGGTGGTGGGGGTCGATTCGCTGCTCA CGCAGATGTCGCGCTGCTGCAAGCCTGCGCCGCCGGACCTGATTGTCGGTTTCGTGACCCGTGGGCGCGGCGTGTCGATC CACCGGCAGAATTGCGCGACGTTCCAGCAACTGGCGGCGCGCGCGCCGGGTCGCGTGATCCAGACCGAGTGGGGCAACCG CGGCGAGGCGGTCTATCCGGTCGATATCCACGTCGAGGCGCTGGACCGCCAGGGGCTGCTGCGCGACATCTCGGAAATCC TCTCGCGCGAGAAGATCAACGTGACCGGCGTGCGCACGCTGTCGAGCAAGGGCGTCGCCAAGATGCAGTTCACGGCCGAG GTATCAGAAGCGACACAATTGCAACGGGCGCTGATATTAATCGAGGAAGTTACTGGGGTATTGTCAGCGCGGCGAAAGTG A
Upstream 100 bases:
>100_bases GCCACCGTGGAGGCCGCGCTGGCCAATCCGAAGTACCGCATCGAGATCGTCGTGACGGCGGCGCGCAAGGGCTGATCCGC ATCCGTTTGCAAGACGCACT
Downstream 100 bases:
>100_bases TGGTATAGTTTCGTCTTTCGGCAGGCTCGTAGCTCAGCTGGTTAGAGCACCACCTTGACATGGTGGGGGTCGTTGGTTCG AGTCCAATCGAGCCTACCAA
Product: GTP pyrophosphokinase
Products: NA
Alternate protein names: (p)ppGpp synthase; ATP:GTP 3'-pyrophosphotransferase; ppGpp synthase I [H]
Number of amino acids: Translated: 746; Mature: 746
Protein sequence:
>746_residues MNSKTDRPAEGAGATADRAAREAAVARALECLADHAGDHQTLTGEPLVSHARGTVAILEGLRVDAPSLQAAALFLLPILA TDNEKAIEPAFGGEVARLVHDVRQLLRIGAIAGMASPAEAGVTRKNEAEARRAQVEALRKMLLAFAQDIRVVLIRLASRL QSLRWLAQNKLPAPEGMARETLDIYAPLANRLGIWQLKWELEDLGFRFEDPDTYKRIARLLDEKRIEREQFIGEAIARLQ QTLRDAGIHAEVSGRPKHIYSIWRKMRGKDLDFADLYDVRAFRVIVDDIKDCYTVLGFVHHMWQPIPKEFDDYISRPKTN GYKSLHTVVIGDDGRALEVQIRTREMHHFAEYGVAAHWRYKEAGSKGYAGQFSASERYDEKIAWLRQLLAWKDDAEHTVA QEDSPWEQLKHTELDDHIYVLTPQARVIALPQGATPVDFAYYLHSDLGHRCRGARVDGTMVPLNTPLKNGQTVEIVTVKQ GGPSRDWLNPELHYLASNRARAKVRAWFNALELEETLAQGRILIDKTLQREGKTAVNLEELAAKLGFKTPDELYAMVAKD EFSLRHVEAVLRTDGAPPAPADDEASITKKSRATSVARGAKSGVLVVGVDSLLTQMSRCCKPAPPDLIVGFVTRGRGVSI HRQNCATFQQLAARAPGRVIQTEWGNRGEAVYPVDIHVEALDRQGLLRDISEILSREKINVTGVRTLSSKGVAKMQFTAE VSEATQLQRALILIEEVTGVLSARRK
Sequences:
>Translated_746_residues MNSKTDRPAEGAGATADRAAREAAVARALECLADHAGDHQTLTGEPLVSHARGTVAILEGLRVDAPSLQAAALFLLPILA TDNEKAIEPAFGGEVARLVHDVRQLLRIGAIAGMASPAEAGVTRKNEAEARRAQVEALRKMLLAFAQDIRVVLIRLASRL QSLRWLAQNKLPAPEGMARETLDIYAPLANRLGIWQLKWELEDLGFRFEDPDTYKRIARLLDEKRIEREQFIGEAIARLQ QTLRDAGIHAEVSGRPKHIYSIWRKMRGKDLDFADLYDVRAFRVIVDDIKDCYTVLGFVHHMWQPIPKEFDDYISRPKTN GYKSLHTVVIGDDGRALEVQIRTREMHHFAEYGVAAHWRYKEAGSKGYAGQFSASERYDEKIAWLRQLLAWKDDAEHTVA QEDSPWEQLKHTELDDHIYVLTPQARVIALPQGATPVDFAYYLHSDLGHRCRGARVDGTMVPLNTPLKNGQTVEIVTVKQ GGPSRDWLNPELHYLASNRARAKVRAWFNALELEETLAQGRILIDKTLQREGKTAVNLEELAAKLGFKTPDELYAMVAKD EFSLRHVEAVLRTDGAPPAPADDEASITKKSRATSVARGAKSGVLVVGVDSLLTQMSRCCKPAPPDLIVGFVTRGRGVSI HRQNCATFQQLAARAPGRVIQTEWGNRGEAVYPVDIHVEALDRQGLLRDISEILSREKINVTGVRTLSSKGVAKMQFTAE VSEATQLQRALILIEEVTGVLSARRK >Mature_746_residues MNSKTDRPAEGAGATADRAAREAAVARALECLADHAGDHQTLTGEPLVSHARGTVAILEGLRVDAPSLQAAALFLLPILA TDNEKAIEPAFGGEVARLVHDVRQLLRIGAIAGMASPAEAGVTRKNEAEARRAQVEALRKMLLAFAQDIRVVLIRLASRL QSLRWLAQNKLPAPEGMARETLDIYAPLANRLGIWQLKWELEDLGFRFEDPDTYKRIARLLDEKRIEREQFIGEAIARLQ QTLRDAGIHAEVSGRPKHIYSIWRKMRGKDLDFADLYDVRAFRVIVDDIKDCYTVLGFVHHMWQPIPKEFDDYISRPKTN GYKSLHTVVIGDDGRALEVQIRTREMHHFAEYGVAAHWRYKEAGSKGYAGQFSASERYDEKIAWLRQLLAWKDDAEHTVA QEDSPWEQLKHTELDDHIYVLTPQARVIALPQGATPVDFAYYLHSDLGHRCRGARVDGTMVPLNTPLKNGQTVEIVTVKQ GGPSRDWLNPELHYLASNRARAKVRAWFNALELEETLAQGRILIDKTLQREGKTAVNLEELAAKLGFKTPDELYAMVAKD EFSLRHVEAVLRTDGAPPAPADDEASITKKSRATSVARGAKSGVLVVGVDSLLTQMSRCCKPAPPDLIVGFVTRGRGVSI HRQNCATFQQLAARAPGRVIQTEWGNRGEAVYPVDIHVEALDRQGLLRDISEILSREKINVTGVRTLSSKGVAKMQFTAE VSEATQLQRALILIEEVTGVLSARRK
Specific function: In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. This enzyme catalyzes the formation of pppGpp which i
COG id: COG0317
COG function: function code TK; Guanosine polyphosphate pyrophosphohydrolases/synthetases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ACT domain [H]
Homologues:
Organism=Escherichia coli, GI1789147, Length=735, Percent_Identity=40.5442176870748, Blast_Score=548, Evalue=1e-157, Organism=Escherichia coli, GI1790082, Length=693, Percent_Identity=34.6320346320346, Blast_Score=394, Evalue=1e-110,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR012675 - InterPro: IPR007685 - InterPro: IPR004811 - InterPro: IPR004095 - InterPro: IPR012676 [H]
Pfam domain/function: PF01842 ACT; PF04607 RelA_SpoT; PF02824 TGS [H]
EC number: =2.7.6.5 [H]
Molecular weight: Translated: 83049; Mature: 83049
Theoretical pI: Translated: 8.17; Mature: 8.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSKTDRPAEGAGATADRAAREAAVARALECLADHAGDHQTLTGEPLVSHARGTVAILEG CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCHHHHHHC LRVDAPSLQAAALFLLPILATDNEKAIEPAFGGEVARLVHDVRQLLRIGAIAGMASPAEA CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHC GVTRKNEAEARRAQVEALRKMLLAFAQDIRVVLIRLASRLQSLRWLAQNKLPAPEGMARE CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH TLDIYAPLANRLGIWQLKWELEDLGFRFEDPDTYKRIARLLDEKRIEREQFIGEAIARLQ HHHHHHHHHHCCCEEEEEEEHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QTLRDAGIHAEVSGRPKHIYSIWRKMRGKDLDFADLYDVRAFRVIVDDIKDCYTVLGFVH HHHHHCCCEEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH HMWQPIPKEFDDYISRPKTNGYKSLHTVVIGDDGRALEVQIRTREMHHFAEYGVAAHWRY HHHCCCCHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEEEHHHHHHHHHCCCCEEEEE KEAGSKGYAGQFSASERYDEKIAWLRQLLAWKDDAEHTVAQEDSPWEQLKHTELDDHIYV HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCHHHHHCCCCCCEEEE LTPQARVIALPQGATPVDFAYYLHSDLGHRCRGARVDGTMVPLNTPLKNGQTVEIVTVKQ ECCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEEEEEEC GGPSRDWLNPELHYLASNRARAKVRAWFNALELEETLAQGRILIDKTLQREGKTAVNLEE CCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHCCCCCCCHHH LAAKLGFKTPDELYAMVAKDEFSLRHVEAVLRTDGAPPAPADDEASITKKSRATSVARGA HHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCC KSGVLVVGVDSLLTQMSRCCKPAPPDLIVGFVTRGRGVSIHRQNCATFQQLAARAPGRVI CCCEEEEEHHHHHHHHHHHCCCCCCHHEEEEEECCCCCEEEHHHHHHHHHHHHCCCCCEE QTEWGNRGEAVYPVDIHVEALDRQGLLRDISEILSREKINVTGVRTLSSKGVAKMQFTAE EECCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEHHH VSEATQLQRALILIEEVTGVLSARRK HHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MNSKTDRPAEGAGATADRAAREAAVARALECLADHAGDHQTLTGEPLVSHARGTVAILEG CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCHHHHHHC LRVDAPSLQAAALFLLPILATDNEKAIEPAFGGEVARLVHDVRQLLRIGAIAGMASPAEA CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHC GVTRKNEAEARRAQVEALRKMLLAFAQDIRVVLIRLASRLQSLRWLAQNKLPAPEGMARE CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH TLDIYAPLANRLGIWQLKWELEDLGFRFEDPDTYKRIARLLDEKRIEREQFIGEAIARLQ HHHHHHHHHHCCCEEEEEEEHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QTLRDAGIHAEVSGRPKHIYSIWRKMRGKDLDFADLYDVRAFRVIVDDIKDCYTVLGFVH HHHHHCCCEEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH HMWQPIPKEFDDYISRPKTNGYKSLHTVVIGDDGRALEVQIRTREMHHFAEYGVAAHWRY HHHCCCCHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEEEHHHHHHHHHCCCCEEEEE KEAGSKGYAGQFSASERYDEKIAWLRQLLAWKDDAEHTVAQEDSPWEQLKHTELDDHIYV HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCHHHHHCCCCCCEEEE LTPQARVIALPQGATPVDFAYYLHSDLGHRCRGARVDGTMVPLNTPLKNGQTVEIVTVKQ ECCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEEEEEEC GGPSRDWLNPELHYLASNRARAKVRAWFNALELEETLAQGRILIDKTLQREGKTAVNLEE CCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHCCCCCCCHHH LAAKLGFKTPDELYAMVAKDEFSLRHVEAVLRTDGAPPAPADDEASITKKSRATSVARGA HHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCC KSGVLVVGVDSLLTQMSRCCKPAPPDLIVGFVTRGRGVSIHRQNCATFQQLAARAPGRVI CCCEEEEEHHHHHHHHHHHCCCCCCHHEEEEEECCCCCEEEHHHHHHHHHHHHCCCCCEE QTEWGNRGEAVYPVDIHVEALDRQGLLRDISEILSREKINVTGVRTLSSKGVAKMQFTAE EECCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEHHH VSEATQLQRALILIEEVTGVLSARRK HHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7928955 [H]