| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is lplT [H]
Identifier: 17546283
GI number: 17546283
Start: 1679169
End: 1681076
Strand: Direct
Name: lplT [H]
Synonym: RSc1564
Alternate gene names: 17546283
Gene position: 1679169-1681076 (Clockwise)
Preceding gene: 17546282
Following gene: 17546284
Centisome position: 45.18
GC content: 67.56
Gene sequence:
>1908_bases ATGAGCCAATCGAGCCAGTTTTCCCTGCTGAAGCAGCGCCGCTTCGCCCCGTTTTTCTGGACCCAGTTCCTGGGCGCCAT GAACGACAACGTGTTCAAGGTCGCCTTCTCATCGCTGGTCACCTATCACGCCGCGCTGTTCGGCAACGCGGACCCGGCCT CGGCAGCGTTCCTGATCTCGGCGATCTTCATCGCGCCGTTCGTGCTGCTGTCGGCCACCAGCGGGCAGATCGCCGACCGC ATGGACAAGGCCCGGCTGATCCGCCTGGTGAAGACGCTGGAGATCGCCATCATGGCGATCGGCTGCGCGGGCTTTGCGCT GCGCCGGGTCGAGCTGCTGTACCTGTGTACCTTCCTGATGGGCGTGCACTCGACGCTGTTCGGGCCGGTCAAATACGCCT ACCTGCCGCAGCACCTGCAACCGTCCGAACTGGTGGGCGGCAACGGCCTGGTGGAGATGGGCACCTTCGTCGCCATCCTG CTCGGCACCATCGGCGGCGGCGAACTGGCCAACCTGACGCGCAACGGCGAGCTGGTCGGCCCGGCGCTGACCGGCATCGC TTGCCTGGCGATCGCCGTCGGCGGCTGGCTGACGGCGCGCGGCGTGCCCGTGTCTCCGGCCTCGCAGCCGGATCTGCGCA TCAACTGGAACCCCGTCTCCGAGACCTGGCGCAACCTGAAGCTGGCCAGCAACCAGCGCGCGGTGTTCCTGAGCCTGCTC GGCATCTCGTGGCTGTGGTTCGTCGGCGCGACCTTCCTGACCTCATTCTTCGCCTTTGCTCGCAACGTGCTCGGCGGCGA TCAGAACGTGGTGACGCTGCTGCTGGCGGTGTTCTCGATCGGCATCGGCCTGGGCTCGGTGCTGTGCGAAAAACTCTCGG GCCGCATGGTGGAGGTCGGCCTGGTGCCGTTCGGCTCGATCGGCATGACGGTGTTCGCGGTGGACCTGTACTTCGCCTCG CATGCCGAGGCGCTGGTCGCGCACGATGCGCTGACGGGCGTGGCCGGCTTCCTGCAGAACCATCGCCACTGGCGCGTGCT GGCCGACCTGTTCCTGCTGGCGATGTTCGGCGGCTTCTACAGCGTGCCGCTGTACGCGCTGATCCAGAGCCGCTGCGAGC CGACGCACCGCGCGCGCATCATCGCCGCCAACAACATCCTCAACGCGCTGTTCATGATCGCTTCGGCGGTGCTGGCGATG GTGCTCACGCGCGCCGGCTTCACCATCCCGCAGCTGTTCCTGGTGACGGGCATCCTCAACGCCGTGGTGGCGATCTACAT CTACACGCTGCTGCCGGAATTCCTGATCCGCTTCGTGATGTGGCTGCTGATCCATACCGTCTACCGCGTCAAGGTGGAGG GCGACGAGCGGATTCCCGACGAGGGCCCGTGCCTGCTGGTCTGCAACCATGTCAGCTTTGTCGACGCGGTGGTGGTGGGG GCCTTCGTGCGCCGGCCGGTGCGCTTCGTGATGGACCACCGCATCTTCCGCGTGCCGCTGCTGTCCTGGTTCTTCCGCAC GATCAAGGCGATCCCCATCGCGCCGGCGCACGAAGACGAGGCGCTGCTCAAGCGCGCCTACGACGCCATCGCCGCCGCGC TGGCCGAGGGCGAGGTGGTCTGCATCTTCCCCGAGGGCAAGATCACGGCCACCGGCGAGATGAATCCGTTCAAGGACGGC GTGCGCCGCATCGTCGAGCGCACCCCGGTGCAGGTGGTGCCGATGGCGCTGCGCGGCCTGTGGGGCAGCTTCTTCTCGCG CAAGGATGGCGCGGCGATGACGCGCCCGTTCCGCCGCGGCTTCCTCAACCGGCTGGAGCTGTGCATCGGCACGCCGGTGG CACCGCAGGCGGTGTCGCCGGAAGGGCTGCAGGCCGCTGTGCTGGCCCTGCGCGGCGAGCGGCGCTAG
Upstream 100 bases:
>100_bases GATCGGCTCTTGACGCCGCCGGGAGCGCCGGTATCCCGAGTCCCCGAAACCCGCCCGCACTGCGAGCGGGTTTTTTGTTG AATCCCGATTTGTCCGCCAG
Downstream 100 bases:
>100_bases CCGCGGCGCAATTGGATACACTGCCGGCTGGCAACGCGGCGGGTCAAGCGGCCCGCCACCTGAAACCCTGATTCCCAACC CCGTTCGTCATACGCCTATG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 635; Mature: 634
Protein sequence:
>635_residues MSQSSQFSLLKQRRFAPFFWTQFLGAMNDNVFKVAFSSLVTYHAALFGNADPASAAFLISAIFIAPFVLLSATSGQIADR MDKARLIRLVKTLEIAIMAIGCAGFALRRVELLYLCTFLMGVHSTLFGPVKYAYLPQHLQPSELVGGNGLVEMGTFVAIL LGTIGGGELANLTRNGELVGPALTGIACLAIAVGGWLTARGVPVSPASQPDLRINWNPVSETWRNLKLASNQRAVFLSLL GISWLWFVGATFLTSFFAFARNVLGGDQNVVTLLLAVFSIGIGLGSVLCEKLSGRMVEVGLVPFGSIGMTVFAVDLYFAS HAEALVAHDALTGVAGFLQNHRHWRVLADLFLLAMFGGFYSVPLYALIQSRCEPTHRARIIAANNILNALFMIASAVLAM VLTRAGFTIPQLFLVTGILNAVVAIYIYTLLPEFLIRFVMWLLIHTVYRVKVEGDERIPDEGPCLLVCNHVSFVDAVVVG AFVRRPVRFVMDHRIFRVPLLSWFFRTIKAIPIAPAHEDEALLKRAYDAIAAALAEGEVVCIFPEGKITATGEMNPFKDG VRRIVERTPVQVVPMALRGLWGSFFSRKDGAAMTRPFRRGFLNRLELCIGTPVAPQAVSPEGLQAAVLALRGERR
Sequences:
>Translated_635_residues MSQSSQFSLLKQRRFAPFFWTQFLGAMNDNVFKVAFSSLVTYHAALFGNADPASAAFLISAIFIAPFVLLSATSGQIADR MDKARLIRLVKTLEIAIMAIGCAGFALRRVELLYLCTFLMGVHSTLFGPVKYAYLPQHLQPSELVGGNGLVEMGTFVAIL LGTIGGGELANLTRNGELVGPALTGIACLAIAVGGWLTARGVPVSPASQPDLRINWNPVSETWRNLKLASNQRAVFLSLL GISWLWFVGATFLTSFFAFARNVLGGDQNVVTLLLAVFSIGIGLGSVLCEKLSGRMVEVGLVPFGSIGMTVFAVDLYFAS HAEALVAHDALTGVAGFLQNHRHWRVLADLFLLAMFGGFYSVPLYALIQSRCEPTHRARIIAANNILNALFMIASAVLAM VLTRAGFTIPQLFLVTGILNAVVAIYIYTLLPEFLIRFVMWLLIHTVYRVKVEGDERIPDEGPCLLVCNHVSFVDAVVVG AFVRRPVRFVMDHRIFRVPLLSWFFRTIKAIPIAPAHEDEALLKRAYDAIAAALAEGEVVCIFPEGKITATGEMNPFKDG VRRIVERTPVQVVPMALRGLWGSFFSRKDGAAMTRPFRRGFLNRLELCIGTPVAPQAVSPEGLQAAVLALRGERR >Mature_634_residues SQSSQFSLLKQRRFAPFFWTQFLGAMNDNVFKVAFSSLVTYHAALFGNADPASAAFLISAIFIAPFVLLSATSGQIADRM DKARLIRLVKTLEIAIMAIGCAGFALRRVELLYLCTFLMGVHSTLFGPVKYAYLPQHLQPSELVGGNGLVEMGTFVAILL GTIGGGELANLTRNGELVGPALTGIACLAIAVGGWLTARGVPVSPASQPDLRINWNPVSETWRNLKLASNQRAVFLSLLG ISWLWFVGATFLTSFFAFARNVLGGDQNVVTLLLAVFSIGIGLGSVLCEKLSGRMVEVGLVPFGSIGMTVFAVDLYFASH AEALVAHDALTGVAGFLQNHRHWRVLADLFLLAMFGGFYSVPLYALIQSRCEPTHRARIIAANNILNALFMIASAVLAMV LTRAGFTIPQLFLVTGILNAVVAIYIYTLLPEFLIRFVMWLLIHTVYRVKVEGDERIPDEGPCLLVCNHVSFVDAVVVGA FVRRPVRFVMDHRIFRVPLLSWFFRTIKAIPIAPAHEDEALLKRAYDAIAAALAEGEVVCIFPEGKITATGEMNPFKDGV RRIVERTPVQVVPMALRGLWGSFFSRKDGAAMTRPFRRGFLNRLELCIGTPVAPQAVSPEGLQAAVLALRGERR
Specific function: Catalyzes the facilitated diffusion of 2-acyl-glycero-3- phosphoethanolamine (2-acyl-GPE) into the cell [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. LplT (TC 2.A.1.42) family [H]
Homologues:
Organism=Escherichia coli, GI1789200, Length=378, Percent_Identity=28.3068783068783, Blast_Score=73, Evalue=7e-14, Organism=Escherichia coli, GI1789201, Length=180, Percent_Identity=30, Blast_Score=71, Evalue=3e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 69347; Mature: 69215
Theoretical pI: Translated: 9.64; Mature: 9.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQSSQFSLLKQRRFAPFFWTQFLGAMNDNVFKVAFSSLVTYHAALFGNADPASAAFLIS CCCCHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH AIFIAPFVLLSATSGQIADRMDKARLIRLVKTLEIAIMAIGCAGFALRRVELLYLCTFLM HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GVHSTLFGPVKYAYLPQHLQPSELVGGNGLVEMGTFVAILLGTIGGGELANLTRNGELVG HHHHHHHCCHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCC PALTGIACLAIAVGGWLTARGVPVSPASQPDLRINWNPVSETWRNLKLASNQRAVFLSLL HHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCEEEECCCHHHHHHCCCCCCCCHHHHHHHH GISWLWFVGATFLTSFFAFARNVLGGDQNVVTLLLAVFSIGIGLGSVLCEKLSGRMVEVG HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE LVPFGSIGMTVFAVDLYFASHAEALVAHDALTGVAGFLQNHRHWRVLADLFLLAMFGGFY CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH SVPLYALIQSRCEPTHRARIIAANNILNALFMIASAVLAMVLTRAGFTIPQLFLVTGILN HHHHHHHHHHHCCCCHHEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH AVVAIYIYTLLPEFLIRFVMWLLIHTVYRVKVEGDERIPDEGPCLLVCNHVSFVDAVVVG HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCEEEEECCHHHHHHHHHH AFVRRPVRFVMDHRIFRVPLLSWFFRTIKAIPIAPAHEDEALLKRAYDAIAAALAEGEVV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCEE CIFPEGKITATGEMNPFKDGVRRIVERTPVQVVPMALRGLWGSFFSRKDGAAMTRPFRRG EEECCCEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH FLNRLELCIGTPVAPQAVSPEGLQAAVLALRGERR HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCC >Mature Secondary Structure SQSSQFSLLKQRRFAPFFWTQFLGAMNDNVFKVAFSSLVTYHAALFGNADPASAAFLIS CCCHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH AIFIAPFVLLSATSGQIADRMDKARLIRLVKTLEIAIMAIGCAGFALRRVELLYLCTFLM HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GVHSTLFGPVKYAYLPQHLQPSELVGGNGLVEMGTFVAILLGTIGGGELANLTRNGELVG HHHHHHHCCHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCC PALTGIACLAIAVGGWLTARGVPVSPASQPDLRINWNPVSETWRNLKLASNQRAVFLSLL HHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCEEEECCCHHHHHHCCCCCCCCHHHHHHHH GISWLWFVGATFLTSFFAFARNVLGGDQNVVTLLLAVFSIGIGLGSVLCEKLSGRMVEVG HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE LVPFGSIGMTVFAVDLYFASHAEALVAHDALTGVAGFLQNHRHWRVLADLFLLAMFGGFY CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH SVPLYALIQSRCEPTHRARIIAANNILNALFMIASAVLAMVLTRAGFTIPQLFLVTGILN HHHHHHHHHHHCCCCHHEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH AVVAIYIYTLLPEFLIRFVMWLLIHTVYRVKVEGDERIPDEGPCLLVCNHVSFVDAVVVG HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCEEEEECCHHHHHHHHHH AFVRRPVRFVMDHRIFRVPLLSWFFRTIKAIPIAPAHEDEALLKRAYDAIAAALAEGEVV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCEE CIFPEGKITATGEMNPFKDGVRRIVERTPVQVVPMALRGLWGSFFSRKDGAAMTRPFRRG EEECCCEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH FLNRLELCIGTPVAPQAVSPEGLQAAVLALRGERR HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA