Click here to switch to the map view.

The map label for this gene is rbcR [H]

Identifier: 17545813

GI number: 17545813

Start: 1151953

End: 1152888

Strand: Direct

Name: rbcR [H]

Synonym: RSc1094

Alternate gene names: 17545813

Gene position: 1151953-1152888 (Clockwise)

Preceding gene: 17545811

Following gene: 17545814

Centisome position: 31.0

GC content: 70.3

Gene sequence:

>936_bases
ATGCGAGACGCCGCCAACCTTCCGCTCGGGCCACCCATGTCATTGCGCGCACTGCGAACCCTGGTCGCCATCGTCCACCA
CGGCACGTTCGCGCGCGCCGGCGAGGCGATCGGGCTCACGCAGTCGGCCGTCAGCCTGCAGGTCAAGGCGCTCGAAGACG
AATTCGGCGTGCGCCTGTTCGACCGCTCGCGGCGCCAGCCTGCGCTTACCGAGGCCGGCCGCATCGTGCTTGCGCAGGCC
GAGCAGATTCTCGCCCTCTACGATCACATCCCGGACTCGCTCAGCGATGAGAAGGCCCTGGTCGGACGGCTGCGCATCGG
CGCCATCCAGACCGCGCTGTCGGGGCCGCTACCCGACGCGCTGCTCGCGCTGCGCCGGGACCATCCGCTGCTGCGCGTGC
ACGTCGCCGCCGGGATGTCCGCCGAGCTGGCGCAGCGCGTCGCGGCCGGGGAGCTCGATGCCGCGATCACCTCGCAGCCG
GTGCGCCCGCATCCGGCCGAGCTCACCTGGACCACGCTCTACGAAGACCGCTTCTGGCTGCTCGCGCCGCCGCAGCACGC
CAACCACGATGCCCGCAAGCTGCTCGAGGAACTGCCGTTCATCCGCTTCGACGCGCAGGCCTGGGCCGGCCGGATGATCG
CGGCGGAACTGCGCCGCCTCGGGGTGCGCGTGCGCGAAGAAATGGTGCTCGATAGCCAGGAGGCGATCGTCCGCATGGTC
GCCAGCGGCCTGGGCGCGGCCATCGTCGCGCTGTCCGACGCGGTGCTCGCGCATCTCCCGCCCCTGGTGCGCTTGCCGTT
CGGCCAGCCGCAGCTGCGCCGCGCGGTCGTACTGCTCGAGCATGCGTCACGTCCCGCGCAACGTTTCGCGCAGGCGCTGA
CCGATGCGGTGACCCGTTCTGCCATGAGAATTTCTCATCGTCAGAACGACAAATAA

Upstream 100 bases:

>100_bases
GGCGCTCGGGCTATGATGGCTGCCTTCGTCTTCGTCCACGCGTATCCCATTGCGCGGCGCAGCGCCGGTGTCCCGGCGGG
GCGCCCGCAAGACGCTGCAA

Downstream 100 bases:

>100_bases
CAATTATTGCTTCTATGTCTACGTGATAACTTGGGCGCCGTCACCGCTCCATGCCCCGCGCCCAATGTTCCACGTCGACC
CGCTCATCCGTTCTGCCCGC

Product: transcriptional regulatory DNA-binding transcription regulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MRDAANLPLGPPMSLRALRTLVAIVHHGTFARAGEAIGLTQSAVSLQVKALEDEFGVRLFDRSRRQPALTEAGRIVLAQA
EQILALYDHIPDSLSDEKALVGRLRIGAIQTALSGPLPDALLALRRDHPLLRVHVAAGMSAELAQRVAAGELDAAITSQP
VRPHPAELTWTTLYEDRFWLLAPPQHANHDARKLLEELPFIRFDAQAWAGRMIAAELRRLGVRVREEMVLDSQEAIVRMV
ASGLGAAIVALSDAVLAHLPPLVRLPFGQPQLRRAVVLLEHASRPAQRFAQALTDAVTRSAMRISHRQNDK

Sequences:

>Translated_311_residues
MRDAANLPLGPPMSLRALRTLVAIVHHGTFARAGEAIGLTQSAVSLQVKALEDEFGVRLFDRSRRQPALTEAGRIVLAQA
EQILALYDHIPDSLSDEKALVGRLRIGAIQTALSGPLPDALLALRRDHPLLRVHVAAGMSAELAQRVAAGELDAAITSQP
VRPHPAELTWTTLYEDRFWLLAPPQHANHDARKLLEELPFIRFDAQAWAGRMIAAELRRLGVRVREEMVLDSQEAIVRMV
ASGLGAAIVALSDAVLAHLPPLVRLPFGQPQLRRAVVLLEHASRPAQRFAQALTDAVTRSAMRISHRQNDK
>Mature_311_residues
MRDAANLPLGPPMSLRALRTLVAIVHHGTFARAGEAIGLTQSAVSLQVKALEDEFGVRLFDRSRRQPALTEAGRIVLAQA
EQILALYDHIPDSLSDEKALVGRLRIGAIQTALSGPLPDALLALRRDHPLLRVHVAAGMSAELAQRVAAGELDAAITSQP
VRPHPAELTWTTLYEDRFWLLAPPQHANHDARKLLEELPFIRFDAQAWAGRMIAAELRRLGVRVREEMVLDSQEAIVRMV
ASGLGAAIVALSDAVLAHLPPLVRLPFGQPQLRRAVVLLEHASRPAQRFAQALTDAVTRSAMRISHRQNDK

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082132, Length=275, Percent_Identity=26.1818181818182, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788748, Length=290, Percent_Identity=27.5862068965517, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1790208, Length=263, Percent_Identity=30.0380228136882, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790399, Length=306, Percent_Identity=26.1437908496732, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1787530, Length=315, Percent_Identity=25.0793650793651, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787879, Length=251, Percent_Identity=28.2868525896414, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI2367136, Length=173, Percent_Identity=27.1676300578035, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788887, Length=177, Percent_Identity=28.2485875706215, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788481, Length=241, Percent_Identity=26.1410788381743, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI145693105, Length=156, Percent_Identity=24.3589743589744, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI87081904, Length=173, Percent_Identity=29.4797687861272, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787601, Length=189, Percent_Identity=24.3386243386243, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1788626, Length=236, Percent_Identity=30.9322033898305, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1788297, Length=243, Percent_Identity=28.8065843621399, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789440, Length=120, Percent_Identity=33.3333333333333, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1789639, Length=128, Percent_Identity=29.6875, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34078; Mature: 34078

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDAANLPLGPPMSLRALRTLVAIVHHGTFARAGEAIGLTQSAVSLQVKALEDEFGVRLF
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHCCCHHCCCHHHHHHHHEEHHHHHCCHHH
DRSRRQPALTEAGRIVLAQAEQILALYDHIPDSLSDEKALVGRLRIGAIQTALSGPLPDA
HHCCCCCCHHHCCCEEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHH
LLALRRDHPLLRVHVAAGMSAELAQRVAAGELDAAITSQPVRPHPAELTWTTLYEDRFWL
HHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCEEE
LAPPQHANHDARKLLEELPFIRFDAQAWAGRMIAAELRRLGVRVREEMVLDSQEAIVRMV
ECCCCCCCHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
ASGLGAAIVALSDAVLAHLPPLVRLPFGQPQLRRAVVLLEHASRPAQRFAQALTDAVTRS
HHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
AMRISHRQNDK
HHHHHHHCCCC
>Mature Secondary Structure
MRDAANLPLGPPMSLRALRTLVAIVHHGTFARAGEAIGLTQSAVSLQVKALEDEFGVRLF
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHCCCHHCCCHHHHHHHHEEHHHHHCCHHH
DRSRRQPALTEAGRIVLAQAEQILALYDHIPDSLSDEKALVGRLRIGAIQTALSGPLPDA
HHCCCCCCHHHCCCEEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHH
LLALRRDHPLLRVHVAAGMSAELAQRVAAGELDAAITSQPVRPHPAELTWTTLYEDRFWL
HHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCEEE
LAPPQHANHDARKLLEELPFIRFDAQAWAGRMIAAELRRLGVRVREEMVLDSQEAIVRMV
ECCCCCCCHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
ASGLGAAIVALSDAVLAHLPPLVRLPFGQPQLRRAVVLLEHASRPAQRFAQALTDAVTRS
HHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
AMRISHRQNDK
HHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]