| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
Click here to switch to the map view.
The map label for this gene is lysN [H]
Identifier: 17545708
GI number: 17545708
Start: 1039746
End: 1041218
Strand: Direct
Name: lysN [H]
Synonym: RSc0989
Alternate gene names: 17545708
Gene position: 1039746-1041218 (Clockwise)
Preceding gene: 17545699
Following gene: 17545709
Centisome position: 27.98
GC content: 69.93
Gene sequence:
>1473_bases ATGACGCCTTCCTCCCCGATCGTCAGCCTGGATGCCAGGCGTACCGCCGCCCGTCCGGCCGCGGAGCAGTTGCCCGACCC GATTCCCTCGGCGCAGATGACGCTGGTCGACCAGTTGACCGAGTGGGCGCGCATGCGCATCGACGAGCGCGTGTTCCGCG CCGGCATGCGCATGCCGTCGATCCGCCAACTGGCCCAGGAGAAGAGCATCTCGCGCTTCACCGTGGTGGAGGCCTATGAG CGGCTGGTGGCGCAGGGGTATCTCGAATCGCGGCGCGGCTCGGGCTTCTACGTGAAGGAGCGCCAAGCGCCGCTGCCCGA GGAGCCGCCGGCGCCGCCCGCCAGCGCGCGCAAGATCGACGTGGCCTGGCTGCTGCGCAACATGTTCCACTCGGCCGAGC CGCGCAAGGCGCCGGGCATCGGCTTCCTGCCCAACGGCTGGCTGGACGGCGAACTGATCGCCAACGCGCTGCGCGCCCTG GGCCGGCAGAACGGCAACCAGTTCCTGGCCTGGGGCACGCCGCAGGGCTTCCTGCCGCTGCGCCAGCAGCTGCAGACGCG GCTGGCCGAGCTGGAGATCGGCGCGCGCCCCGACCAGATCGTCATGACCTCCGGCATCACCCAGTCGCTCGACCTGATCG CGCGCCAGTACGTGCAGCCGGGCGACACGGTGCTGGTGGGCGATCCGGCATGGTTCCTGATGTTCGGCCGCTTCGCCGCG CAGGGCGCGCAGGTGATCGGCGTGCCGTACACCACCGAGGGGCCGGACCTGGTGGCGCTCGAAGGGCTGGTGCAGGTGCG CCGACCCAAGCTGCTGGTGATCAATTCGGTGCTGCACAACCCGACCGGCACCTCGCTGTCGGCGGCCAAGGCGTTCCAGC TGTTGCGGCTGGCCGAGCAGTACGGATTCCTGATCGTCGAAGACGACATCTACGGCGACCTGGCCCCGCCCGGGCACCCG GCCACGCGGCTGGCGAGCCTGGACCAGCTGCGCCGGGTGATCTACCTCGGCAGCTTTTCCAAGACGCTGGCGGCCAACCT GCGCGTGGGCTTCATCGCCTGTCATCCGGAGCTGGCCAAGAACCTGACCGACGGCAAGCTGCTGGCCGGGCTCGCCACGC CGGAGATCAACGAGCGCGTGCTCTACAAGGTGCTGACCGAAGGTCAGTACCGCAAGCACGTCGAGCGCGTGCGCGCCCGG CTCGACCGCGCCCGCGACGGCGTGCAGCGCAGCCTGGAGCGCCTGGGCCTGAAGCTGTTCGCGCAGCAGGGCGCCGGCAT GTTCATCTGGGCCGACACCGGCCGCGACACCAACGCCATCGCCCGCGCCGGGCACGAAGAGGGTTACGTGTTCGCGCCGG GCAGTCTGTTCTCGCCGTCGCAGATGCCCTCGACCTGGATGCGCTTCAATATTGCCACCAGCACCGATCCGGAGATGCTG CGCTTCCTGGCGGATCAGCTCGAGCGCGGCTGA
Upstream 100 bases:
>100_bases CGTGGGGGCGGAAAGCCGACCTTGATGGTAGCGAACTGTGGCTGTACAGTACCTGTACACTTTGGCGTGGCGCTTTCTGT ACAGTTTTTCCGACCTGACC
Downstream 100 bases:
>100_bases CTCGGCCCGGCCACGGGGCAAGGGGCTTGAAAAACGGCTCCGCCGCCCCATCTCCAGTTCACGCGGACCGCCCGCTGGGT GCGGTCCGCTTCGCTTTCTC
Product: transcription regulator protein
Products: NA
Alternate protein names: 2-aminoadipate aminotransferase; Alpha-aminoadipate aminotransferase; AAA-AT; AadAT [H]
Number of amino acids: Translated: 490; Mature: 489
Protein sequence:
>490_residues MTPSSPIVSLDARRTAARPAAEQLPDPIPSAQMTLVDQLTEWARMRIDERVFRAGMRMPSIRQLAQEKSISRFTVVEAYE RLVAQGYLESRRGSGFYVKERQAPLPEEPPAPPASARKIDVAWLLRNMFHSAEPRKAPGIGFLPNGWLDGELIANALRAL GRQNGNQFLAWGTPQGFLPLRQQLQTRLAELEIGARPDQIVMTSGITQSLDLIARQYVQPGDTVLVGDPAWFLMFGRFAA QGAQVIGVPYTTEGPDLVALEGLVQVRRPKLLVINSVLHNPTGTSLSAAKAFQLLRLAEQYGFLIVEDDIYGDLAPPGHP ATRLASLDQLRRVIYLGSFSKTLAANLRVGFIACHPELAKNLTDGKLLAGLATPEINERVLYKVLTEGQYRKHVERVRAR LDRARDGVQRSLERLGLKLFAQQGAGMFIWADTGRDTNAIARAGHEEGYVFAPGSLFSPSQMPSTWMRFNIATSTDPEML RFLADQLERG
Sequences:
>Translated_490_residues MTPSSPIVSLDARRTAARPAAEQLPDPIPSAQMTLVDQLTEWARMRIDERVFRAGMRMPSIRQLAQEKSISRFTVVEAYE RLVAQGYLESRRGSGFYVKERQAPLPEEPPAPPASARKIDVAWLLRNMFHSAEPRKAPGIGFLPNGWLDGELIANALRAL GRQNGNQFLAWGTPQGFLPLRQQLQTRLAELEIGARPDQIVMTSGITQSLDLIARQYVQPGDTVLVGDPAWFLMFGRFAA QGAQVIGVPYTTEGPDLVALEGLVQVRRPKLLVINSVLHNPTGTSLSAAKAFQLLRLAEQYGFLIVEDDIYGDLAPPGHP ATRLASLDQLRRVIYLGSFSKTLAANLRVGFIACHPELAKNLTDGKLLAGLATPEINERVLYKVLTEGQYRKHVERVRAR LDRARDGVQRSLERLGLKLFAQQGAGMFIWADTGRDTNAIARAGHEEGYVFAPGSLFSPSQMPSTWMRFNIATSTDPEML RFLADQLERG >Mature_489_residues TPSSPIVSLDARRTAARPAAEQLPDPIPSAQMTLVDQLTEWARMRIDERVFRAGMRMPSIRQLAQEKSISRFTVVEAYER LVAQGYLESRRGSGFYVKERQAPLPEEPPAPPASARKIDVAWLLRNMFHSAEPRKAPGIGFLPNGWLDGELIANALRALG RQNGNQFLAWGTPQGFLPLRQQLQTRLAELEIGARPDQIVMTSGITQSLDLIARQYVQPGDTVLVGDPAWFLMFGRFAAQ GAQVIGVPYTTEGPDLVALEGLVQVRRPKLLVINSVLHNPTGTSLSAAKAFQLLRLAEQYGFLIVEDDIYGDLAPPGHPA TRLASLDQLRRVIYLGSFSKTLAANLRVGFIACHPELAKNLTDGKLLAGLATPEINERVLYKVLTEGQYRKHVERVRARL DRARDGVQRSLERLGLKLFAQQGAGMFIWADTGRDTNAIARAGHEEGYVFAPGSLFSPSQMPSTWMRFNIATSTDPEMLR FLADQLERG
Specific function: Catalyzes the transfer of an amino group between 2- oxoadipate (2-OA) and glutamate (Glu) to yield alpha-aminodipate (AAA). It can also transaminate glutamate, leucine, and aromatic amino acids. It also conbtributes in the biosynthesis of other amino acid
COG id: COG1167
COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]
Homologues:
Organism=Homo sapiens, GI7705897, Length=336, Percent_Identity=27.3809523809524, Blast_Score=96, Evalue=5e-20, Organism=Homo sapiens, GI33469970, Length=336, Percent_Identity=27.3809523809524, Blast_Score=96, Evalue=5e-20, Organism=Escherichia coli, GI1787710, Length=447, Percent_Identity=27.5167785234899, Blast_Score=150, Evalue=1e-37, Organism=Escherichia coli, GI1790797, Length=482, Percent_Identity=26.3485477178423, Blast_Score=129, Evalue=5e-31,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004839 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 [H]
Pfam domain/function: PF00155 Aminotran_1_2 [H]
EC number: =2.6.1.39 [H]
Molecular weight: Translated: 54270; Mature: 54139
Theoretical pI: Translated: 9.83; Mature: 9.83
Prosite motif: PS50949 HTH_GNTR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPSSPIVSLDARRTAARPAAEQLPDPIPSAQMTLVDQLTEWARMRIDERVFRAGMRMPS CCCCCCEEEECCHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH IRQLAQEKSISRFTVVEAYERLVAQGYLESRRGSGFYVKERQAPLPEEPPAPPASARKID HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCHH VAWLLRNMFHSAEPRKAPGIGFLPNGWLDGELIANALRALGRQNGNQFLAWGTPQGFLPL HHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHH RQQLQTRLAELEIGARPDQIVMTSGITQSLDLIARQYVQPGDTVLVGDPAWFLMFGRFAA HHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHH QGAQVIGVPYTTEGPDLVALEGLVQVRRPKLLVINSVLHNPTGTSLSAAKAFQLLRLAEQ CCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEHHHHCCCCCCCHHHHHHHHHHHHHHH YGFLIVEDDIYGDLAPPGHPATRLASLDQLRRVIYLGSFSKTLAANLRVGFIACHPELAK CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCEEEEEEECHHHHC NLTDGKLLAGLATPEINERVLYKVLTEGQYRKHVERVRARLDRARDGVQRSLERLGLKLF CCCCCCEEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AQQGAGMFIWADTGRDTNAIARAGHEEGYVFAPGSLFSPSQMPSTWMRFNIATSTDPEML HHCCCCEEEEECCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCEEEEECCCCCHHHH RFLADQLERG HHHHHHHCCC >Mature Secondary Structure TPSSPIVSLDARRTAARPAAEQLPDPIPSAQMTLVDQLTEWARMRIDERVFRAGMRMPS CCCCCEEEECCHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH IRQLAQEKSISRFTVVEAYERLVAQGYLESRRGSGFYVKERQAPLPEEPPAPPASARKID HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCHH VAWLLRNMFHSAEPRKAPGIGFLPNGWLDGELIANALRALGRQNGNQFLAWGTPQGFLPL HHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHH RQQLQTRLAELEIGARPDQIVMTSGITQSLDLIARQYVQPGDTVLVGDPAWFLMFGRFAA HHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHH QGAQVIGVPYTTEGPDLVALEGLVQVRRPKLLVINSVLHNPTGTSLSAAKAFQLLRLAEQ CCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEHHHHCCCCCCCHHHHHHHHHHHHHHH YGFLIVEDDIYGDLAPPGHPATRLASLDQLRRVIYLGSFSKTLAANLRVGFIACHPELAK CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCEEEEEEECHHHHC NLTDGKLLAGLATPEINERVLYKVLTEGQYRKHVERVRARLDRARDGVQRSLERLGLKLF CCCCCCEEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AQQGAGMFIWADTGRDTNAIARAGHEEGYVFAPGSLFSPSQMPSTWMRFNIATSTDPEML HHCCCCEEEEECCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCEEEEECCCCCHHHH RFLADQLERG HHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA