| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
Click here to switch to the map view.
The map label for this gene is tyrA [H]
Identifier: 17545625
GI number: 17545625
Start: 957523
End: 958419
Strand: Direct
Name: tyrA [H]
Synonym: RSc0906
Alternate gene names: 17545625
Gene position: 957523-958419 (Clockwise)
Preceding gene: 17545624
Following gene: 17545626
Centisome position: 25.76
GC content: 69.79
Gene sequence:
>897_bases GTGGCCTCTTCTTTTTCCAGTTCCCGGTTGGTGATCGTGGGTGTCGGCCTGATCGGCGGTTCGCTGGCGCTGGCGTTGCG CCGCGCGGGCGTGGTCGGGCAGGTCATCGGCGTCGGGCGGTCGGGGGCGTCGCTGGAGGCGGCGGTCCGCCTGGGGGTGA TCGACGAGGCGTTGCCGATGGAAGCGGCGGTGCGCGGCGCCGACATGGTCGTGCTGTGCGCACCCGTGGCGCAGACGCTG CCGCTGCTGCTCGCGATGCAGCCGCACCTGGGGCCGGACACCATCGTCACCGATGCCGGCAGCACCAAGTCCGACGTCAT CATGGCGGCCAAGACGGCGCTGGGCGACCAGGTCAGCCAGTTCGTGCCGGCGCACCCGATCGCCGGGCGCGAGCTCAATG GCGTCGAGGCGGCGCTGGCCGATCTCTATGTCGGCAAGAAGACCGTGCTGTGCCCGCTGCAGGAAAACCGCCGCGCCGAC GTCGCCCGCGTGCAGGCGATGTGGGATGCCGCGGGGGCGTATTGCCATGTGATGTCGGCTGTGCAGCACGATGCCGTGTT TGCCGCGGTGAGCCATCTGCCGCATGTGCTTTCGTACGCGCTGGTTGCGCAGATCATCAATGCGGAGGACGCCGCGCTCA AGCTCGATTTCGCCGGCGGCGGCTTCCGCGATTTCACCCGCATTGCCGCGTCGTCGCCCGAGATGTGGCGCGACATCTGC CTGTCGAACCGCGAGGCGCTGCTGCGCGAGCTGACCACCTATGAAGCCGTGGTGGGCCGCCTGAAGGCGATGATCGCCGA GCGCGACGCTGAAGCGCTCGAGCGCGTGTTCCGCCGCGCCAGCGAAGCGCGCCTGGCCTGGCCGCAGCGCGCGGCCTCCG CCACACAACCCGAATAA
Upstream 100 bases:
>100_bases CTGACCGGCAGCGCGTCGCACGGCGGTCGCGGCCGGCACATCGGGCGCGACGCACATCGGGCTACAATGCCGCTTTGCTT TTTTCTGGCAGGGCAGTGTT
Downstream 100 bases:
>100_bases CGTTTCTCTCTGACTGGATCCATGGAACACCTCGACGTCGGTCCGCTGAAGGCGGCGCGCGGCACGGTCAAGCTGCCGGG CTCGAAGAGCATCTCCAACC
Product: prephenate dehydrogenase oxidoreductase
Products: NA
Alternate protein names: PDH [H]
Number of amino acids: Translated: 298; Mature: 297
Protein sequence:
>298_residues MASSFSSSRLVIVGVGLIGGSLALALRRAGVVGQVIGVGRSGASLEAAVRLGVIDEALPMEAAVRGADMVVLCAPVAQTL PLLLAMQPHLGPDTIVTDAGSTKSDVIMAAKTALGDQVSQFVPAHPIAGRELNGVEAALADLYVGKKTVLCPLQENRRAD VARVQAMWDAAGAYCHVMSAVQHDAVFAAVSHLPHVLSYALVAQIINAEDAALKLDFAGGGFRDFTRIAASSPEMWRDIC LSNREALLRELTTYEAVVGRLKAMIAERDAEALERVFRRASEARLAWPQRAASATQPE
Sequences:
>Translated_298_residues MASSFSSSRLVIVGVGLIGGSLALALRRAGVVGQVIGVGRSGASLEAAVRLGVIDEALPMEAAVRGADMVVLCAPVAQTL PLLLAMQPHLGPDTIVTDAGSTKSDVIMAAKTALGDQVSQFVPAHPIAGRELNGVEAALADLYVGKKTVLCPLQENRRAD VARVQAMWDAAGAYCHVMSAVQHDAVFAAVSHLPHVLSYALVAQIINAEDAALKLDFAGGGFRDFTRIAASSPEMWRDIC LSNREALLRELTTYEAVVGRLKAMIAERDAEALERVFRRASEARLAWPQRAASATQPE >Mature_297_residues ASSFSSSRLVIVGVGLIGGSLALALRRAGVVGQVIGVGRSGASLEAAVRLGVIDEALPMEAAVRGADMVVLCAPVAQTLP LLLAMQPHLGPDTIVTDAGSTKSDVIMAAKTALGDQVSQFVPAHPIAGRELNGVEAALADLYVGKKTVLCPLQENRRADV ARVQAMWDAAGAYCHVMSAVQHDAVFAAVSHLPHVLSYALVAQIINAEDAALKLDFAGGGFRDFTRIAASSPEMWRDICL SNREALLRELTTYEAVVGRLKAMIAERDAEALERVFRRASEARLAWPQRAASATQPE
Specific function: Unknown
COG id: COG0287
COG function: function code E; Prephenate dehydrogenase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 prephenate/arogenate dehydrogenase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008927 - InterPro: IPR002912 - InterPro: IPR016040 - InterPro: IPR003099 [H]
Pfam domain/function: PF01842 ACT; PF02153 PDH [H]
EC number: =1.3.1.12 [H]
Molecular weight: Translated: 31445; Mature: 31313
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASSFSSSRLVIVGVGLIGGSLALALRRAGVVGQVIGVGRSGASLEAAVRLGVIDEALPM CCCCCCCCCEEEEEECHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCH EAAVRGADMVVLCAPVAQTLPLLLAMQPHLGPDTIVTDAGSTKSDVIMAAKTALGDQVSQ HHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHH FVPAHPIAGRELNGVEAALADLYVGKKTVLCPLQENRRADVARVQAMWDAAGAYCHVMSA HCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH VQHDAVFAAVSHLPHVLSYALVAQIINAEDAALKLDFAGGGFRDFTRIAASSPEMWRDIC HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCHHHHHHHH LSNREALLRELTTYEAVVGRLKAMIAERDAEALERVFRRASEARLAWPQRAASATQPE HCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCC >Mature Secondary Structure ASSFSSSRLVIVGVGLIGGSLALALRRAGVVGQVIGVGRSGASLEAAVRLGVIDEALPM CCCCCCCCEEEEEECHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCH EAAVRGADMVVLCAPVAQTLPLLLAMQPHLGPDTIVTDAGSTKSDVIMAAKTALGDQVSQ HHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHH FVPAHPIAGRELNGVEAALADLYVGKKTVLCPLQENRRADVARVQAMWDAAGAYCHVMSA HCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH VQHDAVFAAVSHLPHVLSYALVAQIINAEDAALKLDFAGGGFRDFTRIAASSPEMWRDIC HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCHHHHHHHH LSNREALLRELTTYEAVVGRLKAMIAERDAEALERVFRRASEARLAWPQRAASATQPE HCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3106153; 9384377 [H]