Click here to switch to the map view.

The map label for this gene is 17228824

Identifier: 17228824

GI number: 17228824

Start: 1577559

End: 1578971

Strand: Direct

Name: 17228824

Synonym: alr1329

Alternate gene names: NA

Gene position: 1577559-1578971 (Clockwise)

Preceding gene: 17228823

Following gene: 17228825

Centisome position: 24.6

GC content: 41.76

Gene sequence:

>1413_bases
ATGAAAAAGATTAATCGCAGAAAGGCAATTAAAACAGTATTTCTCACTAGCTGCGCTATGTTTGGTTTGCTAGCGCCATT
TGGTACACAGATGCAATATGGTTTAGCGCAAGCCAACGATAATTTCTCAATGATCATAGTATCCGATACCCAATATCCTT
GGACAGCAAACACAGATCAAGGAATAGAGGAAACCGAAGATCAAAAAAAGGCGGGTTCAACTATTGCTAATCAAAATCAT
GTCAATAGTGTGAACTCATTGGTACAGCAAGTAGGTAATGTCAGAGGGACAATCCTGAATGGAGATATCACCGCCTTTGG
ACATAGTTGGCAGTTGGATAAGTACAAAGAAATCTGGAAACAGCTTTCCGTCCCCGTTTATCCTGGTCTTGGCAATCATG
ATTACGCCAATAACGTTGATGACTGTTATGCAAACAACTGCGCTATTGGTATGGTCGAGTATGTGCGGGATGCAATTAAA
AAACTCAATCCCCGCAGTTTTGATTATCGTGAAAGTAACAGCTATAAATTTCCAGAACTCCGTACTGAATATATCGGTAG
CCTAGCTTATTCCTGGGATGTGGGTAATATCCACTTTGTTCAGATGCACAACTATCCCATATACGAAAGAAAGTTCGAGG
GTTTTGATGCTAGCGCAGCTAAACGCAAGATTGTGCAGATTAAGCATTCTTTGGACTGGCTAGAAAAAGATTTAACTCAA
GCCAGGAATGAAGGTAAGGCTATCATCCTCAATTATCATGATTCAGATAATAACTGGAAAAATAATTATGCGCCGGCAAC
TTATGAACAGCTAAAAGCACGCTTTAGTGACATCCTGAAAAAATATAACGTGTCAGCTGTTTTTGCGGGTCACTATCACA
CAAGAATTGGCAAAGCTGAACCATATAACAATTTTTCCACTGTTTATGGAAGTGTACCCGTAATTTATAGCGGCTCTGCC
TCTCAGAACAACTATCTACTCGCACGTTTTGAAAATGGACAAATGACTGTGGAAAAAGTGAGTAGCGCCAACGGTGGTGC
GTCACGCACACTTGACGGTACATACACACTTAAAACAGGTAGTCCGGCAACACCCATTGCACCTGCACCAGAACCGGGTT
CGATTACATTTTTCAATCAGGGTGGCTATGTGGCGCGTTATAACCTCAGCTACACATCCGGCGGACAGAAGGCATCATTT
AGTACTGGGAATATGGCTTTAGGTAATAAGAAGCGATACGATTTACCAGCCGATGCTACAAATATCAAGGTTCGTGGTGA
AGCCAAAACTGGACTCATTTGGAATCCGTGGCGTGATATTTTCAATCGTTCAATCGAACACCCTCGTGGGTCGATATGTT
TCAAGAGCTACAGCACGACCTTAAATGCAAAATGGAACAATAGCTGTAACTAA

Upstream 100 bases:

>100_bases
TAAAACCTCAACGTGTAACTCAGCAAGAGGTTCAAAGGCTAAGGCCAGACTTCAATACACAGAAAACAAGGTTTATTGTT
TTTTCTACAGGAGATAAAAG

Downstream 100 bases:

>100_bases
TCAGCAGTGATATTAAGTTTCTCAGATAAACACCAAAGAAAAATCCGAAAAGTCTCATAACTGATGAGTAGATATGAGCA
TAGATTCTACTCCATAGGAT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 470; Mature: 470

Protein sequence:

>470_residues
MKKINRRKAIKTVFLTSCAMFGLLAPFGTQMQYGLAQANDNFSMIIVSDTQYPWTANTDQGIEETEDQKKAGSTIANQNH
VNSVNSLVQQVGNVRGTILNGDITAFGHSWQLDKYKEIWKQLSVPVYPGLGNHDYANNVDDCYANNCAIGMVEYVRDAIK
KLNPRSFDYRESNSYKFPELRTEYIGSLAYSWDVGNIHFVQMHNYPIYERKFEGFDASAAKRKIVQIKHSLDWLEKDLTQ
ARNEGKAIILNYHDSDNNWKNNYAPATYEQLKARFSDILKKYNVSAVFAGHYHTRIGKAEPYNNFSTVYGSVPVIYSGSA
SQNNYLLARFENGQMTVEKVSSANGGASRTLDGTYTLKTGSPATPIAPAPEPGSITFFNQGGYVARYNLSYTSGGQKASF
STGNMALGNKKRYDLPADATNIKVRGEAKTGLIWNPWRDIFNRSIEHPRGSICFKSYSTTLNAKWNNSCN

Sequences:

>Translated_470_residues
MKKINRRKAIKTVFLTSCAMFGLLAPFGTQMQYGLAQANDNFSMIIVSDTQYPWTANTDQGIEETEDQKKAGSTIANQNH
VNSVNSLVQQVGNVRGTILNGDITAFGHSWQLDKYKEIWKQLSVPVYPGLGNHDYANNVDDCYANNCAIGMVEYVRDAIK
KLNPRSFDYRESNSYKFPELRTEYIGSLAYSWDVGNIHFVQMHNYPIYERKFEGFDASAAKRKIVQIKHSLDWLEKDLTQ
ARNEGKAIILNYHDSDNNWKNNYAPATYEQLKARFSDILKKYNVSAVFAGHYHTRIGKAEPYNNFSTVYGSVPVIYSGSA
SQNNYLLARFENGQMTVEKVSSANGGASRTLDGTYTLKTGSPATPIAPAPEPGSITFFNQGGYVARYNLSYTSGGQKASF
STGNMALGNKKRYDLPADATNIKVRGEAKTGLIWNPWRDIFNRSIEHPRGSICFKSYSTTLNAKWNNSCN
>Mature_470_residues
MKKINRRKAIKTVFLTSCAMFGLLAPFGTQMQYGLAQANDNFSMIIVSDTQYPWTANTDQGIEETEDQKKAGSTIANQNH
VNSVNSLVQQVGNVRGTILNGDITAFGHSWQLDKYKEIWKQLSVPVYPGLGNHDYANNVDDCYANNCAIGMVEYVRDAIK
KLNPRSFDYRESNSYKFPELRTEYIGSLAYSWDVGNIHFVQMHNYPIYERKFEGFDASAAKRKIVQIKHSLDWLEKDLTQ
ARNEGKAIILNYHDSDNNWKNNYAPATYEQLKARFSDILKKYNVSAVFAGHYHTRIGKAEPYNNFSTVYGSVPVIYSGSA
SQNNYLLARFENGQMTVEKVSSANGGASRTLDGTYTLKTGSPATPIAPAPEPGSITFFNQGGYVARYNLSYTSGGQKASF
STGNMALGNKKRYDLPADATNIKVRGEAKTGLIWNPWRDIFNRSIEHPRGSICFKSYSTTLNAKWNNSCN

Specific function: Unknown

COG id: COG5555

COG function: function code N; Cytolysin, a secreted calcineurin-like phosphatase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Caenorhabditis elegans, GI86564684, Length=329, Percent_Identity=26.1398176291793, Blast_Score=79, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI86564686, Length=329, Percent_Identity=26.1398176291793, Blast_Score=79, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52720; Mature: 52720

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: PS00211 ABC_TRANSPORTER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKINRRKAIKTVFLTSCAMFGLLAPFGTQMQYGLAQANDNFSMIIVSDTQYPWTANTDQ
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCEEEEEEECCCCCCCCCCCC
GIEETEDQKKAGSTIANQNHVNSVNSLVQQVGNVRGTILNGDITAFGHSWQLDKYKEIWK
CCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCEEECCCCCCCHHHHHHHH
QLSVPVYPGLGNHDYANNVDDCYANNCAIGMVEYVRDAIKKLNPRSFDYRESNSYKFPEL
HCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH
RTEYIGSLAYSWDVGNIHFVQMHNYPIYERKFEGFDASAAKRKIVQIKHSLDWLEKDLTQ
HHHHHCCEEEEECCCCEEEEEECCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ARNEGKAIILNYHDSDNNWKNNYAPATYEQLKARFSDILKKYNVSAVFAGHYHTRIGKAE
HHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHCCCCC
PYNNFSTVYGSVPVIYSGSASQNNYLLARFENGQMTVEKVSSANGGASRTLDGTYTLKTG
CCCCCHHHCCCCCEEEECCCCCCCEEEEEECCCCEEEEEHHCCCCCCCEECCCEEEEECC
SPATPIAPAPEPGSITFFNQGGYVARYNLSYTSGGQKASFSTGNMALGNKKRYDLPADAT
CCCCCCCCCCCCCCEEEECCCCEEEEEEEEECCCCCCCCCCCCCEECCCCCCCCCCCCCC
NIKVRGEAKTGLIWNPWRDIFNRSIEHPRGSICFKSYSTTLNAKWNNSCN
EEEEECCCCCCCEECHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCC
>Mature Secondary Structure
MKKINRRKAIKTVFLTSCAMFGLLAPFGTQMQYGLAQANDNFSMIIVSDTQYPWTANTDQ
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCEEEEEEECCCCCCCCCCCC
GIEETEDQKKAGSTIANQNHVNSVNSLVQQVGNVRGTILNGDITAFGHSWQLDKYKEIWK
CCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCEEECCCCCCCHHHHHHHH
QLSVPVYPGLGNHDYANNVDDCYANNCAIGMVEYVRDAIKKLNPRSFDYRESNSYKFPEL
HCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH
RTEYIGSLAYSWDVGNIHFVQMHNYPIYERKFEGFDASAAKRKIVQIKHSLDWLEKDLTQ
HHHHHCCEEEEECCCCEEEEEECCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ARNEGKAIILNYHDSDNNWKNNYAPATYEQLKARFSDILKKYNVSAVFAGHYHTRIGKAE
HHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHCCCCC
PYNNFSTVYGSVPVIYSGSASQNNYLLARFENGQMTVEKVSSANGGASRTLDGTYTLKTG
CCCCCHHHCCCCCEEEECCCCCCCEEEEEECCCCEEEEEHHCCCCCCCEECCCEEEEECC
SPATPIAPAPEPGSITFFNQGGYVARYNLSYTSGGQKASFSTGNMALGNKKRYDLPADAT
CCCCCCCCCCCCCCEEEECCCCEEEEEEEEECCCCCCCCCCCCCEECCCCCCCCCCCCCC
NIKVRGEAKTGLIWNPWRDIFNRSIEHPRGSICFKSYSTTLNAKWNNSCN
EEEEECCCCCCCEECHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA