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The map label for this gene is 17228576

Identifier: 17228576

GI number: 17228576

Start: 1265503

End: 1266525

Strand: Direct

Name: 17228576

Synonym: alr1081

Alternate gene names: NA

Gene position: 1265503-1266525 (Clockwise)

Preceding gene: 17228575

Following gene: 17228578

Centisome position: 19.73

GC content: 41.06

Gene sequence:

>1023_bases
ATGACGCAATCTTGCAATCGAGTCAACGTTTGGGAAGAACGCCGTAACGAAGCTAATACATACTACAAGCAAGGAAAATT
TTCAGAATATCTCGATTTAGTAACAGAAAATTTACAATTAGCTAGAGCAATTCCAGACCGAGCTAAAGAAGGTCATACAT
TGAACGATATTGGTTTAGCATATCTTGGGTGTTGGCAACCGCAAAAAGCATTAGATTGTTTCCATCAGGCCTTGGCTGTA
GCTGTAGAGATTGGTAATATCCAAGCAGAAGCCACAGCTTTAAGCAATCTAGGTTCTACTTGCAGTCGTCTCGGCAAACT
TACCCAGTCCCTAGAGTACTTTGAGAAAGCCGCGCAAATATTTAGAGAGTTACAAGATACTCAAGGTGAAGTTTCCACCC
TCAATGATATGGCGCTAATTTACATCAGATTGGGTGAACCAAAGCGATCGCTCTTGCTGCAAAATCAAATTTTAGCAATG
CGGCGTTTGTTAGGAGACTTTTCTGGTGAAGCCACCACACTTAATGGCATTGGATTCGCCTATAGTGTTTTAGGTGAGTT
TGAAAAAGCACTCAACTATCTTCAACAAGCACTACCTATTCAAAAAGCAGTCAAGAACTTAGCGGGTGAAGCCATAACTC
TGAACAACATCGCTTCGATCTATCTAGACTTAGGGCAACCCAAACAAGCCCTGTTACTCTACCATCAAGTTCTGTTAACA
CGCCAGTCCATAAGCGATCTTCCCGGCGAAGCCACTACTCTCAACAACATTGGCTTTACCTACTCTAAATTGAGCAGTCA
TCGCAAAGCACTGAAATTCTACAAACAAGCACTTGTCATTTATCAACAACTAGGAGATTCTCTCGGAGAAATTTCGACTT
TGTTGAATATGGGTAATCTTTACGTCACCACAAAACGCAAAAAGTTAGCTCTATTGTGTTATCGCAATGCTCAAACACTA
GCTGAAAAAATTGCAGATCAGACGATCTTTGACAAAGTAAAGCAGTTTATGGATGCTCTGTGA

Upstream 100 bases:

>100_bases
AGGTAGAAAATAAAGGTTAACTTAAAGTTGGGCAACCTGAGGAAGGTTCTATCTGCTCAAGAGTAACCTGCCAATTTATA
TGCAGTACAACTGAGGTCAA

Downstream 100 bases:

>100_bases
ACTACCCCACCTTGCCTTCTGCTGAGGGTGGGGAATTTCGCCGAATTTGTTAAACAAAGCGCTTCATGAGCAGATGAATC
CACAGGAAACTCCGAAACCA

Product: hypothetical protein

Products: NA

Alternate protein names: Tetratricopeptide Repeat Family; Tetratricopeptide Repeat Domain Protein; SARP Family Transcriptional Regulator; Tetratricopeptide TPR_2 Repeat Protein; NB-ARC Domain-Containing Protein; Regulatory Protein AfsR; Diguanylate Cyclase/Serine/Threonine Protein Kinase; Tetratricopeptide Repeat-Containing Protein; NB-ARC Domain Protein; Transcriptional Activator Domain-Containing Protein; Protein Serine/Threonine Phosphatase; Histidine Kinase; Transcriptional Regulator SARP Family; Kinesin Light Chain; Tetratricopeptide Domain-Containing Protein; TPR Repeat-Containing Adenylate/Guanylate Cyclase; AfsR-Like Transcriptional Regulator; TPR Domain-Containing Protein; Adenylate/Guanylate Cyclase With TPR Repeats; Tetratricopeptide Protein; AfsR-Like Regulatory Protein; Transcriptional Regulator SARP Family Protein; LOW QUALITY PROTEIN Regulatory Protein AfsR; SLEI Family; TPR Domain Family Protein; Transcriptional Regulator; XRE Family Transcriptional Regulator; Serine/Threonine Protein Kinase With TPR Repeats; Diguanylate Cyclase; Transcriptional Activator Domain Protein; LOW QUALITY PROTEIN Tetratricopeptide Repeat Protein; XRE Family Transcriptional Regulator With TPR Repeat Domain; AfsR Family Transcriptional Regulator; Signal Transduction Protein; WD-40 Repeat-Containing Protein; Signal Transduction Histidine Kinase-Like Protein; Peptidase Domain-Containing Protein; Two-Component System Response Regulator; ATPase Containing TPR Repeat Domain; Signal Transduction Histidine Kinase; Peptidase-Like; Sensor Histidine Kinase/Response Regulator; Fis Family Transcriptional Regulator; Histidine Kinase InteRNAl Region

Number of amino acids: Translated: 340; Mature: 339

Protein sequence:

>340_residues
MTQSCNRVNVWEERRNEANTYYKQGKFSEYLDLVTENLQLARAIPDRAKEGHTLNDIGLAYLGCWQPQKALDCFHQALAV
AVEIGNIQAEATALSNLGSTCSRLGKLTQSLEYFEKAAQIFRELQDTQGEVSTLNDMALIYIRLGEPKRSLLLQNQILAM
RRLLGDFSGEATTLNGIGFAYSVLGEFEKALNYLQQALPIQKAVKNLAGEAITLNNIASIYLDLGQPKQALLLYHQVLLT
RQSISDLPGEATTLNNIGFTYSKLSSHRKALKFYKQALVIYQQLGDSLGEISTLLNMGNLYVTTKRKKLALLCYRNAQTL
AEKIADQTIFDKVKQFMDAL

Sequences:

>Translated_340_residues
MTQSCNRVNVWEERRNEANTYYKQGKFSEYLDLVTENLQLARAIPDRAKEGHTLNDIGLAYLGCWQPQKALDCFHQALAV
AVEIGNIQAEATALSNLGSTCSRLGKLTQSLEYFEKAAQIFRELQDTQGEVSTLNDMALIYIRLGEPKRSLLLQNQILAM
RRLLGDFSGEATTLNGIGFAYSVLGEFEKALNYLQQALPIQKAVKNLAGEAITLNNIASIYLDLGQPKQALLLYHQVLLT
RQSISDLPGEATTLNNIGFTYSKLSSHRKALKFYKQALVIYQQLGDSLGEISTLLNMGNLYVTTKRKKLALLCYRNAQTL
AEKIADQTIFDKVKQFMDAL
>Mature_339_residues
TQSCNRVNVWEERRNEANTYYKQGKFSEYLDLVTENLQLARAIPDRAKEGHTLNDIGLAYLGCWQPQKALDCFHQALAVA
VEIGNIQAEATALSNLGSTCSRLGKLTQSLEYFEKAAQIFRELQDTQGEVSTLNDMALIYIRLGEPKRSLLLQNQILAMR
RLLGDFSGEATTLNGIGFAYSVLGEFEKALNYLQQALPIQKAVKNLAGEAITLNNIASIYLDLGQPKQALLLYHQVLLTR
QSISDLPGEATTLNNIGFTYSKLSSHRKALKFYKQALVIYQQLGDSLGEISTLLNMGNLYVTTKRKKLALLCYRNAQTLA
EKIADQTIFDKVKQFMDAL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI224028289, Length=319, Percent_Identity=26.9592476489028, Blast_Score=119, Evalue=3e-27,
Organism=Homo sapiens, GI164519122, Length=305, Percent_Identity=24.9180327868852, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI224548925, Length=314, Percent_Identity=24.8407643312102, Blast_Score=92, Evalue=9e-19,
Organism=Homo sapiens, GI224548927, Length=314, Percent_Identity=24.8407643312102, Blast_Score=91, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24660950, Length=285, Percent_Identity=28.7719298245614, Blast_Score=116, Evalue=2e-26,
Organism=Drosophila melanogaster, GI24650658, Length=302, Percent_Identity=23.5099337748344, Blast_Score=92, Evalue=5e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38058; Mature: 37927

Theoretical pI: Translated: 8.42; Mature: 8.42

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQSCNRVNVWEERRNEANTYYKQGKFSEYLDLVTENLQLARAIPDRAKEGHTLNDIGLA
CCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHH
YLGCWQPQKALDCFHQALAVAVEIGNIQAEATALSNLGSTCSRLGKLTQSLEYFEKAAQI
HHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FRELQDTQGEVSTLNDMALIYIRLGEPKRSLLLQNQILAMRRLLGDFSGEATTLNGIGFA
HHHHHHCCCHHHHHCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHH
YSVLGEFEKALNYLQQALPIQKAVKNLAGEAITLNNIASIYLDLGQPKQALLLYHQVLLT
HHHHHHHHHHHHHHHHHCCHHHHHHHHCCCEEEHHHHHHHHHCCCCCHHHHHHHHHHHHH
RQSISDLPGEATTLNNIGFTYSKLSSHRKALKFYKQALVIYQQLGDSLGEISTLLNMGNL
HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
YVTTKRKKLALLCYRNAQTLAEKIADQTIFDKVKQFMDAL
EEEECCCCEEHEEECCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TQSCNRVNVWEERRNEANTYYKQGKFSEYLDLVTENLQLARAIPDRAKEGHTLNDIGLA
CCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHH
YLGCWQPQKALDCFHQALAVAVEIGNIQAEATALSNLGSTCSRLGKLTQSLEYFEKAAQI
HHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FRELQDTQGEVSTLNDMALIYIRLGEPKRSLLLQNQILAMRRLLGDFSGEATTLNGIGFA
HHHHHHCCCHHHHHCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHH
YSVLGEFEKALNYLQQALPIQKAVKNLAGEAITLNNIASIYLDLGQPKQALLLYHQVLLT
HHHHHHHHHHHHHHHHHCCHHHHHHHHCCCEEEHHHHHHHHHCCCCCHHHHHHHHHHHHH
RQSISDLPGEATTLNNIGFTYSKLSSHRKALKFYKQALVIYQQLGDSLGEISTLLNMGNL
HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
YVTTKRKKLALLCYRNAQTLAEKIADQTIFDKVKQFMDAL
EEEECCCCEEHEEECCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA