Click here to switch to the map view.

The map label for this gene is marT [H]

Identifier: 39546372

GI number: 39546372

Start: 3958198

End: 3958986

Strand: Reverse

Name: marT [H]

Synonym: STM3759.S

Alternate gene names: 39546372

Gene position: 3958986-3958198 (Counterclockwise)

Preceding gene: 16767046

Following gene: 16767042

Centisome position: 81.5

GC content: 47.15

Gene sequence:

>789_bases
ATGTTTTGGCATGGTAACAATGCGATGTTATGGATAATTAACGATAATATTGAATTTAATCCAGAAATGAATCGCCTGGC
TTCATTATCGAGGCCAGATCTCAACATTATTCTGACAACGCCCGCCAGCCGCTGCTTGCGCCTTCTGCTGGAAAACGCCC
CCTCCGTCGTCTCACAACAAACATTCTTTCAAAAAGTGTGGGAAGAAGACGGCATGGTGGTGTCGGCAAATACGCTTTAT
CAGAATATCTCCATTATTCGCCGCGGATTACGTACCGTTGGCGAAAATGAAGATACGCTGATAATCACGGTTCCGCGTAG
AGGCTTTCAGATTGAGCCAGGTGTGAGCCTCATGACCATCCGCAAAGACTTCGCTCAGGCAATAGAAAAAAAGGGTGAGA
CGCCACCGCGTATGTCAGGGCGTTGGTTTAAACATTATGTACCTGTACTTTGGATGACCGGGACATTTGCTGTCGGTATT
TTGCTTGGCACTATAAGCTGGCAAACCGTTCCCGATAAGGATTTTTACGATCGCTACACGCTGGTTGAAACAACTCAGGG
CTGTCATTTTTTCTCGCGGAATGAAGATATCGAAAGCGGCAGCCGCTTTGCAAGCTATAAGTCAATGATTCTAAAAACCG
GTATGGATTGTCAGAAATACCCATGGGTCTATTTCCCTTCCAGCAGTCGCACCCCAGCGGTTACGGCATTGATTTGTCAG
CAACCTTATAAAACGCGCGGTGATACAGGCTGCGTGACGCTTTTTTTCCGCGGGGTGACACATGGGTAA

Upstream 100 bases:

>100_bases
CTATATGATCGGTATGTGCAGGGGACAATCCATGTCCTGCTACGCAGCCACAGCATCAGACTATACTCAGTGGTGTCTAT
TAACCCTCTCCAACTACGTT

Downstream 100 bases:

>100_bases
AAAGGCACTGATGTTAGCCTGCCTGACGCTACTGTGTCTGGGTGTAGGGCTTGGACATCTTTTTCATTTGTATACGGAAA
AGAACCGGGATCCAGAGAAA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MFWHGNNAMLWIINDNIEFNPEMNRLASLSRPDLNIILTTPASRCLRLLLENAPSVVSQQTFFQKVWEEDGMVVSANTLY
QNISIIRRGLRTVGENEDTLIITVPRRGFQIEPGVSLMTIRKDFAQAIEKKGETPPRMSGRWFKHYVPVLWMTGTFAVGI
LLGTISWQTVPDKDFYDRYTLVETTQGCHFFSRNEDIESGSRFASYKSMILKTGMDCQKYPWVYFPSSSRTPAVTALICQ
QPYKTRGDTGCVTLFFRGVTHG

Sequences:

>Translated_262_residues
MFWHGNNAMLWIINDNIEFNPEMNRLASLSRPDLNIILTTPASRCLRLLLENAPSVVSQQTFFQKVWEEDGMVVSANTLY
QNISIIRRGLRTVGENEDTLIITVPRRGFQIEPGVSLMTIRKDFAQAIEKKGETPPRMSGRWFKHYVPVLWMTGTFAVGI
LLGTISWQTVPDKDFYDRYTLVETTQGCHFFSRNEDIESGSRFASYKSMILKTGMDCQKYPWVYFPSSSRTPAVTALICQ
QPYKTRGDTGCVTLFFRGVTHG
>Mature_262_residues
MFWHGNNAMLWIINDNIEFNPEMNRLASLSRPDLNIILTTPASRCLRLLLENAPSVVSQQTFFQKVWEEDGMVVSANTLY
QNISIIRRGLRTVGENEDTLIITVPRRGFQIEPGVSLMTIRKDFAQAIEKKGETPPRMSGRWFKHYVPVLWMTGTFAVGI
LLGTISWQTVPDKDFYDRYTLVETTQGCHFFSRNEDIESGSRFASYKSMILKTGMDCQKYPWVYFPSSSRTPAVTALICQ
QPYKTRGDTGCVTLFFRGVTHG

Specific function: Unknown

COG id: COG3710

COG function: function code K; DNA-binding winged-HTH domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To V.cholerae cholera toxin transcriptional activator (toxR) [H]

Homologues:

Organism=Escherichia coli, GI1789213, Length=267, Percent_Identity=40.4494382022472, Blast_Score=214, Evalue=7e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001867
- InterPro:   IPR016032
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 29943; Mature: 29943

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFWHGNNAMLWIINDNIEFNPEMNRLASLSRPDLNIILTTPASRCLRLLLENAPSVVSQQ
CEEECCCEEEEEECCCEEECCCHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCHHHHHH
TFFQKVWEEDGMVVSANTLYQNISIIRRGLRTVGENEDTLIITVPRRGFQIEPGVSLMTI
HHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEECCCCEEEHH
RKDFAQAIEKKGETPPRMSGRWFKHYVPVLWMTGTFAVGILLGTISWQTVPDKDFYDRYT
HHHHHHHHHHCCCCCCCCCCCHHHHHHHHEEHHHHHHHHHHHHHCCCCCCCCCCHHCCEE
LVETTQGCHFFSRNEDIESGSRFASYKSMILKTGMDCQKYPWVYFPSSSRTPAVTALICQ
EEECCCCCEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCEEEEECC
QPYKTRGDTGCVTLFFRGVTHG
CCCCCCCCCCEEEEEEECCCCC
>Mature Secondary Structure
MFWHGNNAMLWIINDNIEFNPEMNRLASLSRPDLNIILTTPASRCLRLLLENAPSVVSQQ
CEEECCCEEEEEECCCEEECCCHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCHHHHHH
TFFQKVWEEDGMVVSANTLYQNISIIRRGLRTVGENEDTLIITVPRRGFQIEPGVSLMTI
HHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEECCCCEEEHH
RKDFAQAIEKKGETPPRMSGRWFKHYVPVLWMTGTFAVGILLGTISWQTVPDKDFYDRYT
HHHHHHHHHHCCCCCCCCCCCHHHHHHHHEEHHHHHHHHHHHHHCCCCCCCCCCHHCCEE
LVETTQGCHFFSRNEDIESGSRFASYKSMILKTGMDCQKYPWVYFPSSSRTPAVTALICQ
EEECCCCCEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCEEEEECC
QPYKTRGDTGCVTLFFRGVTHG
CCCCCCCCCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]