Click here to switch to the map view.

The map label for this gene is stdA [H]

Identifier: 39546355

GI number: 39546355

Start: 3191120

End: 3191680

Strand: Reverse

Name: stdA [H]

Synonym: STM3029.S

Alternate gene names: 39546355

Gene position: 3191680-3191120 (Counterclockwise)

Preceding gene: 16766332

Following gene: 16766330

Centisome position: 65.71

GC content: 52.76

Gene sequence:

>561_bases
ATGGCGGCTGCCGGTATGATGTATGGTGCTTCTGTATTTGCCGCCGATACTACACCCACAGCAGGCCCGTTCGGCTCAGG
TAAAATTCTTTTCACTGGTACCATCACCAACTCACCCTGTGATATCGCACCGGGCGACGATGCGATCACCGTTCCGTTTG
GACAGATTTCTTACCGTAAACTGAATACCGCCAATGCAACCACGGACTCAAAACCGTTCACCATTCATCTGCAGAACTGC
GCCTTCGATCCGAATGAAACTACAATAGCCGGCTCCGCAGGGAAAATGTCTAAAGTAACCGTCTCTTTCAGTGGCACAGC
AGATACCTCAGGTAAAGCTTACGTCAGCACCGGCAGTGCCCAGCATGTTGGTGTGCAGCTTCTGAAAGGTGACAACACCT
CACTGATTACACCCAATACCCCGATGCCGGATGGCGACGCCCAGCAACTGCAGGCCGGGAATAACGAACTCAACTTCTTT
GCCCGCCTGATAGCCCTGACAGATGCCGCAACTCCTGGCGATGTTAACGCATCCGTCACCTACACCCTGAAATACCTGTG
A

Upstream 100 bases:

>100_bases
CGCTTTCATTAATACCCTCAGAGTTGTTTTCAGCCTTTGCAAAATAATTCTCATTCACCCAAAGGACATATTATCTATGC
GTAATAAAATAATACTTGCC

Downstream 100 bases:

>100_bases
TTTCACGCGGTAAATAACGACAGGGAGAAGCCGTCCACGGAGGGGATCGGACGGCTTTTATATCTGACTGTGCCTGCGGG
CTGTCTGTTACACGGACGAC

Product: fimbrial-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 185

Protein sequence:

>186_residues
MAAAGMMYGASVFAADTTPTAGPFGSGKILFTGTITNSPCDIAPGDDAITVPFGQISYRKLNTANATTDSKPFTIHLQNC
AFDPNETTIAGSAGKMSKVTVSFSGTADTSGKAYVSTGSAQHVGVQLLKGDNTSLITPNTPMPDGDAQQLQAGNNELNFF
ARLIALTDAATPGDVNASVTYTLKYL

Sequences:

>Translated_186_residues
MAAAGMMYGASVFAADTTPTAGPFGSGKILFTGTITNSPCDIAPGDDAITVPFGQISYRKLNTANATTDSKPFTIHLQNC
AFDPNETTIAGSAGKMSKVTVSFSGTADTSGKAYVSTGSAQHVGVQLLKGDNTSLITPNTPMPDGDAQQLQAGNNELNFF
ARLIALTDAATPGDVNASVTYTLKYL
>Mature_185_residues
AAAGMMYGASVFAADTTPTAGPFGSGKILFTGTITNSPCDIAPGDDAITVPFGQISYRKLNTANATTDSKPFTIHLQNCA
FDPNETTIAGSAGKMSKVTVSFSGTADTSGKAYVSTGSAQHVGVQLLKGDNTSLITPNTPMPDGDAQQLQAGNNELNFFA
RLIALTDAATPGDVNASVTYTLKYL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Fimbrium (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

Organism=Escherichia coli, GI1786938, Length=191, Percent_Identity=32.4607329842932, Blast_Score=77, Evalue=6e-16,
Organism=Escherichia coli, GI1789422, Length=197, Percent_Identity=29.9492385786802, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI87082421, Length=163, Percent_Identity=30.0613496932515, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788680, Length=199, Percent_Identity=33.1658291457286, Blast_Score=60, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 19139; Mature: 19008

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAAGMMYGASVFAADTTPTAGPFGSGKILFTGTITNSPCDIAPGDDAITVPFGQISYRK
CCCCCCEECCEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEE
LNTANATTDSKPFTIHLQNCAFDPNETTIAGSAGKMSKVTVSFSGTADTSGKAYVSTGSA
ECCCCCCCCCCCEEEEECCCCCCCCCCEEECCCCCCEEEEEEECCCCCCCCEEEEECCCC
QHVGVQLLKGDNTSLITPNTPMPDGDAQQLQAGNNELNFFARLIALTDAATPGDVNASVT
CEEEEEEEECCCCEEEECCCCCCCCCHHHHHCCCCHHHHHEEEEHHHCCCCCCCCCCEEE
YTLKYL
EEEEEC
>Mature Secondary Structure 
AAAGMMYGASVFAADTTPTAGPFGSGKILFTGTITNSPCDIAPGDDAITVPFGQISYRK
CCCCCEECCEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCEEEEE
LNTANATTDSKPFTIHLQNCAFDPNETTIAGSAGKMSKVTVSFSGTADTSGKAYVSTGSA
ECCCCCCCCCCCEEEEECCCCCCCCCCEEECCCCCCEEEEEEECCCCCCCCEEEEECCCC
QHVGVQLLKGDNTSLITPNTPMPDGDAQQLQAGNNELNFFARLIALTDAATPGDVNASVT
CEEEEEEEECCCCEEEECCCCCCCCCHHHHHCCCCHHHHHEEEEHHHCCCCCCCCCCEEE
YTLKYL
EEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 7984428 [H]