| Definition | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chromosome, complete genome. |
|---|---|
| Accession | NC_003197 |
| Length | 4,857,432 |
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The map label for this gene is stdB [H]
Identifier: 16766330
GI number: 16766330
Start: 3188511
End: 3191000
Strand: Reverse
Name: stdB [H]
Synonym: STM3028
Alternate gene names: 16766330
Gene position: 3191000-3188511 (Counterclockwise)
Preceding gene: 39546355
Following gene: 16766329
Centisome position: 65.69
GC content: 60.72
Gene sequence:
>2490_bases ATGAAAATTACCCGGCTTGCCATTCTGATTACCCTGACATTTTCCGTCCTGAAGTCGCAGGCCACGGAGTTCAATGCCAG CCTGCTGGACAGCGGGAACCTGTCTAACGTGGACCTCACGGCCTTCAGCCGCGAGGGGTATGTGGCGCCCGGTAACTATA TTCTCGATATCTGGCTCAATGACCAGCCGGTACGGGAACAGTATCCGGTCAGGGTTGTACCGGTTGCCGGACTCGACGCG GCCGTCATCTGTGTGACAACAGACATGGTGGCCATGCTGGGTCTTAAGGATAAGATTATTCATGGCCTGAAACCCGTTAC CGGTATCCCGGACGGGCAATGCCTTGAGCTGCGCTCCGCTGACAGTCAGGTACGGTACAGCGCTGAAAATCAGCGTCTGA CCTTCATTATTCCCCAGGCCTGGATGCGTTATCAGGACCCGGACTGGGTGCCCCCTTCACGCTGGAGCGACGGCGTCACC GCCGGCCTGCTTGATTACAGCCTGATGGTCAACCGCTATATGCCGCAGCAGGGGGAAACCTCTACCAGCTACAGCCTCTA CGGCACCGCCGGGTTTAATCTCGGCGCCTGGCGATTGCGGAGCGATTACCAGTACAGCCGTTTTGACAGTGGGCAGGGCG CATCACAGTCCGATTTTTATCTGCCGCAGACGTATCTGTTCCGTGCCTTGCCAGCACTGCGCTCAAAACTGACGCTCGGA CAGACGTACCTCAGCTCCGCTATTTTTGACTCCTTCCGCTTTGCCGGGCTCACTTTGGCCAGCGATGAGCGCATGCTGCC GCCCTCTCTTCAGGGGTATGCCCCGAAAATTAGCGGCATTGCGAACAGTAATGCACAGGTCACCGTCAGCCAGAATGGTC GCATTCTGTACCAGACCCGGGTGTCGCCGGGGCCTTTTGAGCTTCCCGACCTGAGCCAGAATATCAGCGGCAACCTGGAT GTCAGCGTCCGGGAAAGCGACGGTAGCGTCCGGACCTGGCAGGTCAACACGGCCAGCGTCCCCTTTATGGCACGCCAGGG ACAGGTTCGCTATAAGGTGGCCGCCGGACGTCCGCTGTACGGCGGGACGCATAACAACAGCACGGTCAGCCCTGACTTTC TGCTCGGGGAGGCCACCTGGGGAGCATTTAACAACACGTCGCTGTATGGCGGCCTCATTGCCTCCACCGGCGACTACCAG TCCGCGGCGCTCGGGATCGGCCAGAATATGGGGCTGTTGGGCGCTCTGTCTGCGGACGTCACCCGCTCAGATGCGCGGTT GCCGCATGGGCAGAAGCAGTCCGGTTACAGCTACCGTATCAACTATGCCAAAACGTTTGATAAAACCGGCAGTACCCTGG CGTTCGTCGGATACCGCTTCTCGGACCGCCATTTTCTGTCCATGCCGGAGTACCTGCAGCGTCGGACCACTGACGGCGGC GATGCATGGCATGAAAAACAGAGCTACACCGTGACTTATAGCCAGTCCGTTCCGGTACTCAACATGAGCGCGGCCCTCTC GGTAAGCCGGCTCAATTACTGGAACGCACAGTCCAACAATAACTACATGCTCAGCCTCAACAAGGTGTTCAGTCTCGGCG ACCTTCAGGGACTCTCGGCCTCGGTGTCGTTTGCCCGTAACCAGTACACCGGCGGGGGTAGCCAGAACCAGGTCTACGCC ACCATCAGTATCCCGTGGGGAGACAGTCGCCAGGTGAGTTACAGCGTACAGAAAGATAACCGGGGCGGCCTGCAGCAGAC CGTGAATTACAGCGATTTCCATAACCCGGACACTACATGGAACATCAGCGCCGGTCATAACCGTTATGACACCGGCAGCA ACAGCAGCTTCAGCGGCAGCGTGCAGAGCCGTCTGCCGTGGGGCCAAGCGGCAGCGGACGCCACCCTGCAGCCCGGACAG TACCGCAGCCTGGGCCTGAGCTGGTACGGCTCGGTGACTGCCACCGCCCACGGTGCCGCTTTCAGCCAGTCGATGGCCGG GAATGAGCCCCGCATGATGATAGATACCGGAGACGTGGCCGGTGTGCCGGTGAACGGCAACAGCGGGGTGACCAACCGCT TCGGGGTGGGCGTGGTGAGCGCCGGCAGCAGCTATCGCCGCAGCGATATTTCGGTTGATGTGGCCGCCCTGCCGGAGGAC GTGGACGTCAGCAGCTCCGTCATCAGCCAGGTGCTGACGGAGGGCGCGGTGGGCTACCGGAAGATTGACGCCAACCAGGG GGAGCAGGTGCTCGGTCATATCCGGCTGGCTGATGGCGCAAGTCCGCCGTTTGGCGCCCTGGTGGTGTCCTGGAAAACCG GCAGAACCGCGGGGATGGTCGGAGATGGCGGTCTGGCCTACCTGACAGGTCTCAGCGGGGAAGACCGCCGGACCCTGAAT GTGTCCTGGGATGGCCGGGTGCAGTGCAGACTCACCCTGCCGGAAACGGTGACACTCAGCCGGGGGCCGCTGTTACTGCC CTGCAGATAA
Upstream 100 bases:
>100_bases ACAGGGAGAAGCCGTCCACGGAGGGGATCGGACGGCTTTTATATCTGACTGTGCCTGCGGGCTGTCTGTTACACGGACGA CAACACGAAAGCGCCATGCC
Downstream 100 bases:
>100_bases AAATATCCCTGTCACAGAGCAGGTCTAAAGGAGAAAACAGGTGAAAAACAGCAGAAGAAGCCGTGTGATTTTACTCGCAC TGGCGGCGGCATGGAGCCAG
Product: outer membrane usher protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 829; Mature: 829
Protein sequence:
>829_residues MKITRLAILITLTFSVLKSQATEFNASLLDSGNLSNVDLTAFSREGYVAPGNYILDIWLNDQPVREQYPVRVVPVAGLDA AVICVTTDMVAMLGLKDKIIHGLKPVTGIPDGQCLELRSADSQVRYSAENQRLTFIIPQAWMRYQDPDWVPPSRWSDGVT AGLLDYSLMVNRYMPQQGETSTSYSLYGTAGFNLGAWRLRSDYQYSRFDSGQGASQSDFYLPQTYLFRALPALRSKLTLG QTYLSSAIFDSFRFAGLTLASDERMLPPSLQGYAPKISGIANSNAQVTVSQNGRILYQTRVSPGPFELPDLSQNISGNLD VSVRESDGSVRTWQVNTASVPFMARQGQVRYKVAAGRPLYGGTHNNSTVSPDFLLGEATWGAFNNTSLYGGLIASTGDYQ SAALGIGQNMGLLGALSADVTRSDARLPHGQKQSGYSYRINYAKTFDKTGSTLAFVGYRFSDRHFLSMPEYLQRRTTDGG DAWHEKQSYTVTYSQSVPVLNMSAALSVSRLNYWNAQSNNNYMLSLNKVFSLGDLQGLSASVSFARNQYTGGGSQNQVYA TISIPWGDSRQVSYSVQKDNRGGLQQTVNYSDFHNPDTTWNISAGHNRYDTGSNSSFSGSVQSRLPWGQAAADATLQPGQ YRSLGLSWYGSVTATAHGAAFSQSMAGNEPRMMIDTGDVAGVPVNGNSGVTNRFGVGVVSAGSSYRRSDISVDVAALPED VDVSSSVISQVLTEGAVGYRKIDANQGEQVLGHIRLADGASPPFGALVVSWKTGRTAGMVGDGGLAYLTGLSGEDRRTLN VSWDGRVQCRLTLPETVTLSRGPLLLPCR
Sequences:
>Translated_829_residues MKITRLAILITLTFSVLKSQATEFNASLLDSGNLSNVDLTAFSREGYVAPGNYILDIWLNDQPVREQYPVRVVPVAGLDA AVICVTTDMVAMLGLKDKIIHGLKPVTGIPDGQCLELRSADSQVRYSAENQRLTFIIPQAWMRYQDPDWVPPSRWSDGVT AGLLDYSLMVNRYMPQQGETSTSYSLYGTAGFNLGAWRLRSDYQYSRFDSGQGASQSDFYLPQTYLFRALPALRSKLTLG QTYLSSAIFDSFRFAGLTLASDERMLPPSLQGYAPKISGIANSNAQVTVSQNGRILYQTRVSPGPFELPDLSQNISGNLD VSVRESDGSVRTWQVNTASVPFMARQGQVRYKVAAGRPLYGGTHNNSTVSPDFLLGEATWGAFNNTSLYGGLIASTGDYQ SAALGIGQNMGLLGALSADVTRSDARLPHGQKQSGYSYRINYAKTFDKTGSTLAFVGYRFSDRHFLSMPEYLQRRTTDGG DAWHEKQSYTVTYSQSVPVLNMSAALSVSRLNYWNAQSNNNYMLSLNKVFSLGDLQGLSASVSFARNQYTGGGSQNQVYA TISIPWGDSRQVSYSVQKDNRGGLQQTVNYSDFHNPDTTWNISAGHNRYDTGSNSSFSGSVQSRLPWGQAAADATLQPGQ YRSLGLSWYGSVTATAHGAAFSQSMAGNEPRMMIDTGDVAGVPVNGNSGVTNRFGVGVVSAGSSYRRSDISVDVAALPED VDVSSSVISQVLTEGAVGYRKIDANQGEQVLGHIRLADGASPPFGALVVSWKTGRTAGMVGDGGLAYLTGLSGEDRRTLN VSWDGRVQCRLTLPETVTLSRGPLLLPCR >Mature_829_residues MKITRLAILITLTFSVLKSQATEFNASLLDSGNLSNVDLTAFSREGYVAPGNYILDIWLNDQPVREQYPVRVVPVAGLDA AVICVTTDMVAMLGLKDKIIHGLKPVTGIPDGQCLELRSADSQVRYSAENQRLTFIIPQAWMRYQDPDWVPPSRWSDGVT AGLLDYSLMVNRYMPQQGETSTSYSLYGTAGFNLGAWRLRSDYQYSRFDSGQGASQSDFYLPQTYLFRALPALRSKLTLG QTYLSSAIFDSFRFAGLTLASDERMLPPSLQGYAPKISGIANSNAQVTVSQNGRILYQTRVSPGPFELPDLSQNISGNLD VSVRESDGSVRTWQVNTASVPFMARQGQVRYKVAAGRPLYGGTHNNSTVSPDFLLGEATWGAFNNTSLYGGLIASTGDYQ SAALGIGQNMGLLGALSADVTRSDARLPHGQKQSGYSYRINYAKTFDKTGSTLAFVGYRFSDRHFLSMPEYLQRRTTDGG DAWHEKQSYTVTYSQSVPVLNMSAALSVSRLNYWNAQSNNNYMLSLNKVFSLGDLQGLSASVSFARNQYTGGGSQNQVYA TISIPWGDSRQVSYSVQKDNRGGLQQTVNYSDFHNPDTTWNISAGHNRYDTGSNSSFSGSVQSRLPWGQAAADATLQPGQ YRSLGLSWYGSVTATAHGAAFSQSMAGNEPRMMIDTGDVAGVPVNGNSGVTNRFGVGVVSAGSSYRRSDISVDVAALPED VDVSSSVISQVLTEGAVGYRKIDANQGEQVLGHIRLADGASPPFGALVVSWKTGRTAGMVGDGGLAYLTGLSGEDRRTLN VSWDGRVQCRLTLPETVTLSRGPLLLPCR
Specific function: Involved in the export and assembly of a fimbrial subunit across the outer membrane [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fimbrial export usher family [H]
Homologues:
Organism=Escherichia coli, GI87081778, Length=832, Percent_Identity=40.1442307692308, Blast_Score=579, Evalue=1e-166, Organism=Escherichia coli, GI1786332, Length=844, Percent_Identity=29.8578199052133, Blast_Score=323, Evalue=2e-89, Organism=Escherichia coli, GI1789533, Length=797, Percent_Identity=31.3676286072773, Blast_Score=296, Evalue=4e-81, Organism=Escherichia coli, GI1787172, Length=848, Percent_Identity=29.8349056603774, Blast_Score=294, Evalue=2e-80, Organism=Escherichia coli, GI1790772, Length=819, Percent_Identity=29.3040293040293, Blast_Score=278, Evalue=1e-75, Organism=Escherichia coli, GI1786744, Length=851, Percent_Identity=29.0246768507638, Blast_Score=268, Evalue=1e-72, Organism=Escherichia coli, GI1788427, Length=812, Percent_Identity=28.9408866995074, Blast_Score=244, Evalue=2e-65, Organism=Escherichia coli, GI1789610, Length=854, Percent_Identity=23.4192037470726, Blast_Score=115, Evalue=9e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000015 - InterPro: IPR018030 [H]
Pfam domain/function: PF00577 Usher [H]
EC number: NA
Molecular weight: Translated: 89887; Mature: 89887
Theoretical pI: Translated: 8.21; Mature: 8.21
Prosite motif: PS01151 FIMBRIAL_USHER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKITRLAILITLTFSVLKSQATEFNASLLDSGNLSNVDLTAFSREGYVAPGNYILDIWLN CCHHHEEEEEHHHHHHHHHHHHHCCCEEECCCCCCCEEEEEECCCCEECCCCEEEEEEEC DQPVREQYPVRVVPVAGLDAAVICVTTDMVAMLGLKDKIIHGLKPVTGIPDGQCLELRSA CCCCHHCCCEEEEEECCCCEEEEEEEHHHHHHHCCHHHHHHCCCCCCCCCCCCEEEECCC DSQVRYSAENQRLTFIIPQAWMRYQDPDWVPPSRWSDGVTAGLLDYSLMVNRYMPQQGET CCCEEEECCCCEEEEEECHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC STSYSLYGTAGFNLGAWRLRSDYQYSRFDSGQGASQSDFYLPQTYLFRALPALRSKLTLG CCEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH QTYLSSAIFDSFRFAGLTLASDERMLPPSLQGYAPKISGIANSNAQVTVSQNGRILYQTR HHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEEE VSPGPFELPDLSQNISGNLDVSVRESDGSVRTWQVNTASVPFMARQGQVRYKVAAGRPLY CCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCEEECCCCEEEEEECCCCCC GGTHNNSTVSPDFLLGEATWGAFNNTSLYGGLIASTGDYQSAALGIGQNMGLLGALSADV CCCCCCCCCCCCEEEECCCCCCCCCCEEECEEEECCCCCCHHEECCCCCCCEEEECCCCC TRSDARLPHGQKQSGYSYRINYAKTFDKTGSTLAFVGYRFSDRHFLSMPEYLQRRTTDGG CCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEEEEECCCEEECCHHHHHHHCCCCC DAWHEKQSYTVTYSQSVPVLNMSAALSVSRLNYWNAQSNNNYMLSLNKVFSLGDLQGLSA CHHCCCCCEEEEEECCCCEEEHHHHEEEEEEEEECCCCCCCEEEEEHHEECCCCCCCCCC SVSFARNQYTGGGSQNQVYATISIPWGDSRQVSYSVQKDNRGGLQQTVNYSDFHNPDTTW EEEEHHCCCCCCCCCCEEEEEEEECCCCCCEEEEEEECCCCCCHHHCCCCCCCCCCCCEE NISAGHNRYDTGSNSSFSGSVQSRLPWGQAAADATLQPGQYRSLGLSWYGSVTATAHGAA EECCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEECEEEECCEEEEECCCH FSQSMAGNEPRMMIDTGDVAGVPVNGNSGVTNRFGVGVVSAGSSYRRSDISVDVAALPED HHHHHCCCCCEEEEECCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCEEEEEECCCC VDVSSSVISQVLTEGAVGYRKIDANQGEQVLGHIRLADGASPPFGALVVSWKTGRTAGMV CCCHHHHHHHHHHHCCCCEEEECCCCCCEEEEEEEEECCCCCCCCEEEEEEECCCEECEE GDGGLAYLTGLSGEDRRTLNVSWDGRVQCRLTLPETVTLSRGPLLLPCR CCCCEEEEECCCCCCCEEEEEEECCEEEEEEECCCEEEECCCCEEECCC >Mature Secondary Structure MKITRLAILITLTFSVLKSQATEFNASLLDSGNLSNVDLTAFSREGYVAPGNYILDIWLN CCHHHEEEEEHHHHHHHHHHHHHCCCEEECCCCCCCEEEEEECCCCEECCCCEEEEEEEC DQPVREQYPVRVVPVAGLDAAVICVTTDMVAMLGLKDKIIHGLKPVTGIPDGQCLELRSA CCCCHHCCCEEEEEECCCCEEEEEEEHHHHHHHCCHHHHHHCCCCCCCCCCCCEEEECCC DSQVRYSAENQRLTFIIPQAWMRYQDPDWVPPSRWSDGVTAGLLDYSLMVNRYMPQQGET CCCEEEECCCCEEEEEECHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC STSYSLYGTAGFNLGAWRLRSDYQYSRFDSGQGASQSDFYLPQTYLFRALPALRSKLTLG CCEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH QTYLSSAIFDSFRFAGLTLASDERMLPPSLQGYAPKISGIANSNAQVTVSQNGRILYQTR HHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEEE VSPGPFELPDLSQNISGNLDVSVRESDGSVRTWQVNTASVPFMARQGQVRYKVAAGRPLY CCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCEEECCCCEEEEEECCCCCC GGTHNNSTVSPDFLLGEATWGAFNNTSLYGGLIASTGDYQSAALGIGQNMGLLGALSADV CCCCCCCCCCCCEEEECCCCCCCCCCEEECEEEECCCCCCHHEECCCCCCCEEEECCCCC TRSDARLPHGQKQSGYSYRINYAKTFDKTGSTLAFVGYRFSDRHFLSMPEYLQRRTTDGG CCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEEEEECCCEEECCHHHHHHHCCCCC DAWHEKQSYTVTYSQSVPVLNMSAALSVSRLNYWNAQSNNNYMLSLNKVFSLGDLQGLSA CHHCCCCCEEEEEECCCCEEEHHHHEEEEEEEEECCCCCCCEEEEEHHEECCCCCCCCCC SVSFARNQYTGGGSQNQVYATISIPWGDSRQVSYSVQKDNRGGLQQTVNYSDFHNPDTTW EEEEHHCCCCCCCCCCEEEEEEEECCCCCCEEEEEEECCCCCCHHHCCCCCCCCCCCCEE NISAGHNRYDTGSNSSFSGSVQSRLPWGQAAADATLQPGQYRSLGLSWYGSVTATAHGAA EECCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEECEEEECCEEEEECCCH FSQSMAGNEPRMMIDTGDVAGVPVNGNSGVTNRFGVGVVSAGSSYRRSDISVDVAALPED HHHHHCCCCCEEEEECCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCEEEEEECCCC VDVSSSVISQVLTEGAVGYRKIDANQGEQVLGHIRLADGASPPFGALVVSWKTGRTAGMV CCCHHHHHHHHHHHCCCCEEEECCCCCCEEEEEEEEECCCCCCCCEEEEEEECCCEECEE GDGGLAYLTGLSGEDRRTLNVSWDGRVQCRLTLPETVTLSRGPLLLPCR CCCCEEEEECCCCCCCEEEEEEECCEEEEEEECCCEEEECCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9205837; 9278503 [H]