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The map label for this gene is yicJ [H]

Identifier: 16767035

GI number: 16767035

Start: 3946906

End: 3948288

Strand: Reverse

Name: yicJ [H]

Synonym: STM3750

Alternate gene names: 16767035

Gene position: 3948288-3946906 (Counterclockwise)

Preceding gene: 16767036

Following gene: 16767034

Centisome position: 81.28

GC content: 54.45

Gene sequence:

>1383_bases
ATGAAAAGTGAAATTCTCTCCGTTAAGGAGAAGATTGGCTATGGTATGGGCGATGCCGCCAGCCACATCATCTTTGATAA
CGTCATGTTATATATGATGTTCTTCTATACCGATATTTTCGGCATTCCCGCTGGTTTTGTTGGCACCATGTTTTTACTGG
CGCGTGCGCTTGATGCCATCTCCGACCCTTGTATGGGCCTGCTGGCCGACCGCACCCGCTCTCGCTGGGGCAAATTCCGA
CCCTGGGTGCTGTTTGGCGCGTTGCCGTTTGGTATCGTTTGTGTGCTGGCTTATAGCACGCCGGATCTCAGTCTGAACGG
CAAAATGATTTATGCCGCCATCACCTACACGTTGCTCACCCTTCTGTACACTGTGGTCAACATCCCTTACTGCGCGTTGG
GGGGTGTAATAACCAATGACCCAACGCAGCGTATCTCCCTGCAATCCTGGCGCTTTGTGCTGGCAACGGCGGGCGGAATG
CTTTCTACCGTACTGATGATGCCTCTGGTGAAACTGATTGGCGGCGAGAATAAGGCGCTGGGCTTCCAGGGGGGTATCGC
GGCGCTCTCGGTGGTGGCGTTCCTGATGCTGGCGTTCTGCTTCTTTACCACCAAAGAGCGCGTTGAAGCGCCTGCCACCC
ATACCTCCATGCGTGAAGACCTGCGTGATATCTGGCACAACGACCAGTGGCGCATAGTCGGCCTGCTCACCATCCTGAAT
ATTCTGGCGGTATGCGTGCGCGGCGGGGCGATGATGTATTACGTCACCTGGATATTGGGCAAACCGGGCGTGTTTGTCGC
CTTCCTCACCACCTATTGCGTCGGCAACCTGATTGGCTCGGCGCTGGCAAAACCGTTGACCGACTGGAAATGCAAAGTGA
GCGTTTTCTGGTGGACCAATGCTTTACTCGCAGTAATCAGCGTGGCGATGTTCTTCGTACCGATGCACGCCACGATCGCT
ATGTTCGTCTTTATCTTTGTGATTGGCGTATTGCACCAGTTAGTCACGCCTATCCAGTGGGTGATGATGTCTGACACCGT
CGACTATGGCGAATGGTGTAACGGCAAACGCCTGACGGGGATCAGTTTTGCCGGCACGTTGTTCGTGCTGAAACTGGGTC
TTGCCCTCGGCGGGGCGCTGATTGGCTGGATGCTGGCAGGCGGCGGTTACGACGCGGCGGCGAAAACGCAAAACAGCGCC
ACGATCAGCATCATCATCGCTCTGTTCACTATCGTCCCGGCCATCTGTTATCTGCTGAGCGCCGCGATCGCTAAACGCTA
CTACACCCTGAAAAGCCCGTTCCTGAAAACCATTCTGGAACAACTGGCGCAGGGCGCACACCGTAATGAACAAGAATTTA
CCCATAAAGAATTGCAGAACTAA

Upstream 100 bases:

>100_bases
GTAATTTGATAACCAAATAACGGAATATTCACGCTCGCAGGGAAGGTTTACAAAAACTGTAACCGGTATTAGTGAGCGTT
GTGAGCGTTAAGGATGCGTA

Downstream 100 bases:

>100_bases
AGGAACAGACTATGAAAATTAGCGACGGAAACTGGCTGATCCAGCCTGGCCTTAATTTGATTCACCCGGTTCAGGTGTTC
GACGTTGAACAGCACGGGAA

Product: transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 460; Mature: 460

Protein sequence:

>460_residues
MKSEILSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLLARALDAISDPCMGLLADRTRSRWGKFR
PWVLFGALPFGIVCVLAYSTPDLSLNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGM
LSTVLMMPLVKLIGGENKALGFQGGIAALSVVAFLMLAFCFFTTKERVEAPATHTSMREDLRDIWHNDQWRIVGLLTILN
ILAVCVRGGAMMYYVTWILGKPGVFVAFLTTYCVGNLIGSALAKPLTDWKCKVSVFWWTNALLAVISVAMFFVPMHATIA
MFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLALGGALIGWMLAGGGYDAAAKTQNSA
TISIIIALFTIVPAICYLLSAAIAKRYYTLKSPFLKTILEQLAQGAHRNEQEFTHKELQN

Sequences:

>Translated_460_residues
MKSEILSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLLARALDAISDPCMGLLADRTRSRWGKFR
PWVLFGALPFGIVCVLAYSTPDLSLNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGM
LSTVLMMPLVKLIGGENKALGFQGGIAALSVVAFLMLAFCFFTTKERVEAPATHTSMREDLRDIWHNDQWRIVGLLTILN
ILAVCVRGGAMMYYVTWILGKPGVFVAFLTTYCVGNLIGSALAKPLTDWKCKVSVFWWTNALLAVISVAMFFVPMHATIA
MFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLALGGALIGWMLAGGGYDAAAKTQNSA
TISIIIALFTIVPAICYLLSAAIAKRYYTLKSPFLKTILEQLAQGAHRNEQEFTHKELQN
>Mature_460_residues
MKSEILSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLLARALDAISDPCMGLLADRTRSRWGKFR
PWVLFGALPFGIVCVLAYSTPDLSLNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGM
LSTVLMMPLVKLIGGENKALGFQGGIAALSVVAFLMLAFCFFTTKERVEAPATHTSMREDLRDIWHNDQWRIVGLLTILN
ILAVCVRGGAMMYYVTWILGKPGVFVAFLTTYCVGNLIGSALAKPLTDWKCKVSVFWWTNALLAVISVAMFFVPMHATIA
MFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLALGGALIGWMLAGGGYDAAAKTQNSA
TISIIIALFTIVPAICYLLSAAIAKRYYTLKSPFLKTILEQLAQGAHRNEQEFTHKELQN

Specific function: Unknown

COG id: COG2211

COG function: function code G; Na+/melibiose symporter and related transporters

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:galactoside symporter (TC 2.A.2) family [H]

Homologues:

Organism=Escherichia coli, GI87082306, Length=460, Percent_Identity=91.304347826087, Blast_Score=843, Evalue=0.0,
Organism=Escherichia coli, GI1786466, Length=447, Percent_Identity=41.834451901566, Blast_Score=360, Evalue=1e-100,
Organism=Escherichia coli, GI1790561, Length=464, Percent_Identity=27.3706896551724, Blast_Score=187, Evalue=2e-48,
Organism=Escherichia coli, GI145693206, Length=444, Percent_Identity=28.1531531531532, Blast_Score=179, Evalue=3e-46,
Organism=Escherichia coli, GI48994989, Length=462, Percent_Identity=29.4372294372294, Blast_Score=168, Evalue=5e-43,
Organism=Escherichia coli, GI1787902, Length=455, Percent_Identity=28.1318681318681, Blast_Score=162, Evalue=5e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016196
- InterPro:   IPR001927
- InterPro:   IPR018043 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50613; Mature: 50613

Theoretical pI: Translated: 8.86; Mature: 8.86

Prosite motif: PS00872 NA_GALACTOSIDE_SYMP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSEILSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLLARALDAI
CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
SDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSLNGKMIYAAITYTLLT
CCHHHHHHHHHHHHHCCCCCCHHEEHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
LLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVKLIGGENKAL
HHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCC
GFQGGIAALSVVAFLMLAFCFFTTKERVEAPATHTSMREDLRDIWHNDQWRIVGLLTILN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
ILAVCVRGGAMMYYVTWILGKPGVFVAFLTTYCVGNLIGSALAKPLTDWKCKVSVFWWTN
HHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHH
ALLAVISVAMFFVPMHATIAMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCEECC
ISFAGTLFVLKLGLALGGALIGWMLAGGGYDAAAKTQNSATISIIIALFTIVPAICYLLS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
AAIAKRYYTLKSPFLKTILEQLAQGAHRNEQEFTHKELQN
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MKSEILSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLLARALDAI
CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
SDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSLNGKMIYAAITYTLLT
CCHHHHHHHHHHHHHCCCCCCHHEEHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
LLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVKLIGGENKAL
HHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCC
GFQGGIAALSVVAFLMLAFCFFTTKERVEAPATHTSMREDLRDIWHNDQWRIVGLLTILN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
ILAVCVRGGAMMYYVTWILGKPGVFVAFLTTYCVGNLIGSALAKPLTDWKCKVSVFWWTN
HHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHH
ALLAVISVAMFFVPMHATIAMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCEECC
ISFAGTLFVLKLGLALGGALIGWMLAGGGYDAAAKTQNSATISIIIALFTIVPAICYLLS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
AAIAKRYYTLKSPFLKTILEQLAQGAHRNEQEFTHKELQN
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7686882; 9278503 [H]