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The map label for this gene is yibD [H]

Identifier: 16766992

GI number: 16766992

Start: 3901354

End: 3902388

Strand: Reverse

Name: yibD [H]

Synonym: STM3707

Alternate gene names: 16766992

Gene position: 3902388-3901354 (Counterclockwise)

Preceding gene: 16766993

Following gene: 16766988

Centisome position: 80.34

GC content: 48.12

Gene sequence:

>1035_bases
ATGAAAAATAGTAAAACCAAAGTGAGTATCATTGTCCCGTTATATAATGCGGGAGCGGATTTTAATGCTTGCATGGCGTC
GTTAATCGCGCAAACGTGGTCGGCGCTGGAAATTATTATTGTGAATGATGGATCGACGGATCATTCCGTTGAGATAGCAA
AACATTACGCGGAACATTACCCACATGTTCGACTGCTTCATCAGGCCAATGCTGGCGCATCTGTCGCCCGTAATCTTGGC
CTGCAAGCGGCGACCGGCGATTATGTCGCCTTTGTCGATGCGGATGACCAGGTCTACCCGAAGATGTATGAAACGCTGAT
GACTATGGCGCTTAACGATGATCTGGACGTTGCGCAGTGTAATGCGGACTGGTGCGTCCGAAAAACCGGGCACGCCTGGC
AATCTATTCCGACCGATCGTCTGCGTTCCACCGGGGTATTAAGCGGACCGGATTGGTTGCGTATGGCGTTGGCCTCGCGG
CGCTGGACGCATGTTGTCTGGATGGGCGTTTATCGACGTGCGTTAATTACCGATAACAATATTACTTTCGTTCCCGGACT
ACATCATCAGGACATATTATGGTCGACGGAAGTTATGTTTAATGCCACGCGCGTACGTTATACCGAACAATCATTATATA
AATATTTCCTGCATGATAATTCGGTAAGCCGTTTGCAAAGACAAGGCAATAAAAATCTTAATTATCAGCGGCATTATATT
AAAATTACGCGATTATTAGAAAAGCTCAATCGTGATTATGCCCGTCGTATTCCGATTTACCCGGAATTTCGCCAGCAAAT
TACCTGGGAAGCGTTACGCGTTTGTCATGCGGTACGTAAAGAGCCTGATATTTTGACCCGCCAGCGTATGATTGCCGAAA
TTTTTACTTCTGGCATGTATAGACGGATGATGGCTAACGTCCGCAGCGCGAAAGCAGCTTATCAGACGCTGCTCTGGTCC
TTCCGGCTGTGGCAATGGCGCGACAAAACCTTGTCGCACCGTCGTATGGCCCGTAAGGCGCTCAATCTGTCTTAG

Upstream 100 bases:

>100_bases
CTTGCTTTTTACTGTAAAAATTAATTATGGCGGCTTAATAGTTTCTTAATAGAGCCACAGTATAAAGGCAGGGTAAATTA
AGGTTTTTCTGGTAATCGTT

Downstream 100 bases:

>100_bases
CGCTCACGTTTTTAGGCGCGGCGATTTTCCCCCAGCCTTGCCACTGGTGCTGAAACCAGGTAACCACGGAACTTTGCGTA
ATGCTCTCGCCGATGACGCT

Product: glycosyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 344; Mature: 344

Protein sequence:

>344_residues
MKNSKTKVSIIVPLYNAGADFNACMASLIAQTWSALEIIIVNDGSTDHSVEIAKHYAEHYPHVRLLHQANAGASVARNLG
LQAATGDYVAFVDADDQVYPKMYETLMTMALNDDLDVAQCNADWCVRKTGHAWQSIPTDRLRSTGVLSGPDWLRMALASR
RWTHVVWMGVYRRALITDNNITFVPGLHHQDILWSTEVMFNATRVRYTEQSLYKYFLHDNSVSRLQRQGNKNLNYQRHYI
KITRLLEKLNRDYARRIPIYPEFRQQITWEALRVCHAVRKEPDILTRQRMIAEIFTSGMYRRMMANVRSAKAAYQTLLWS
FRLWQWRDKTLSHRRMARKALNLS

Sequences:

>Translated_344_residues
MKNSKTKVSIIVPLYNAGADFNACMASLIAQTWSALEIIIVNDGSTDHSVEIAKHYAEHYPHVRLLHQANAGASVARNLG
LQAATGDYVAFVDADDQVYPKMYETLMTMALNDDLDVAQCNADWCVRKTGHAWQSIPTDRLRSTGVLSGPDWLRMALASR
RWTHVVWMGVYRRALITDNNITFVPGLHHQDILWSTEVMFNATRVRYTEQSLYKYFLHDNSVSRLQRQGNKNLNYQRHYI
KITRLLEKLNRDYARRIPIYPEFRQQITWEALRVCHAVRKEPDILTRQRMIAEIFTSGMYRRMMANVRSAKAAYQTLLWS
FRLWQWRDKTLSHRRMARKALNLS
>Mature_344_residues
MKNSKTKVSIIVPLYNAGADFNACMASLIAQTWSALEIIIVNDGSTDHSVEIAKHYAEHYPHVRLLHQANAGASVARNLG
LQAATGDYVAFVDADDQVYPKMYETLMTMALNDDLDVAQCNADWCVRKTGHAWQSIPTDRLRSTGVLSGPDWLRMALASR
RWTHVVWMGVYRRALITDNNITFVPGLHHQDILWSTEVMFNATRVRYTEQSLYKYFLHDNSVSRLQRQGNKNLNYQRHYI
KITRLLEKLNRDYARRIPIYPEFRQQITWEALRVCHAVRKEPDILTRQRMIAEIFTSGMYRRMMANVRSAKAAYQTLLWS
FRLWQWRDKTLSHRRMARKALNLS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790044, Length=343, Percent_Identity=80.466472303207, Blast_Score=597, Evalue=1e-172,
Organism=Escherichia coli, GI1787259, Length=90, Percent_Identity=35.5555555555556, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 40052; Mature: 40052

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNSKTKVSIIVPLYNAGADFNACMASLIAQTWSALEIIIVNDGSTDHSVEIAKHYAEHY
CCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHC
PHVRLLHQANAGASVARNLGLQAATGDYVAFVDADDQVYPKMYETLMTMALNDDLDVAQC
CCEEEEECCCCCHHHHHHCCCEECCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEC
NADWCVRKTGHAWQSIPTDRLRSTGVLSGPDWLRMALASRRWTHVVWMGVYRRALITDNN
CCCHHHHCCCCHHHCCCHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHEECCC
ITFVPGLHHQDILWSTEVMFNATRVRYTEQSLYKYFLHDNSVSRLQRQGNKNLNYQRHYI
EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHH
KITRLLEKLNRDYARRIPIYPEFRQQITWEALRVCHAVRKEPDILTRQRMIAEIFTSGMY
HHHHHHHHHCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
RRMMANVRSAKAAYQTLLWSFRLWQWRDKTLSHRRMARKALNLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKNSKTKVSIIVPLYNAGADFNACMASLIAQTWSALEIIIVNDGSTDHSVEIAKHYAEHY
CCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHC
PHVRLLHQANAGASVARNLGLQAATGDYVAFVDADDQVYPKMYETLMTMALNDDLDVAQC
CCEEEEECCCCCHHHHHHCCCEECCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEC
NADWCVRKTGHAWQSIPTDRLRSTGVLSGPDWLRMALASRRWTHVVWMGVYRRALITDNN
CCCHHHHCCCCHHHCCCHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHEECCC
ITFVPGLHHQDILWSTEVMFNATRVRYTEQSLYKYFLHDNSVSRLQRQGNKNLNYQRHYI
EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHH
KITRLLEKLNRDYARRIPIYPEFRQQITWEALRVCHAVRKEPDILTRQRMIAEIFTSGMY
HHHHHHHHHCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
RRMMANVRSAKAAYQTLLWSFRLWQWRDKTLSHRRMARKALNLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2647748 [H]