| Definition | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chromosome, complete genome. |
|---|---|
| Accession | NC_003197 |
| Length | 4,857,432 |
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The map label for this gene is selA [H]
Identifier: 16766968
GI number: 16766968
Start: 3872693
End: 3874084
Strand: Reverse
Name: selA [H]
Synonym: STM3683
Alternate gene names: 16766968
Gene position: 3874084-3872693 (Counterclockwise)
Preceding gene: 16766969
Following gene: 16766967
Centisome position: 79.76
GC content: 59.34
Gene sequence:
>1392_bases ATGACAAGCGAAACGCGTACACTCTACAGCCAGCTTCCTGCTATCGATCGTTTATTGCACGATAGCGCCTTTCTTTCTCT GCGCGATCGGTATGGCCATACCCAGGTGGTTGATCTGCTTAGGCGGATGCTTGACGACGCGCGCGACGTCATCCGGAATA CGCAAACGCTTCCCGACTGGTACGCAGACTGGGCGCAAGAGGCGAAACTCCGGCTGGAAAATGCGGCGCAAAGCGCGCTG CGCCCGGTGATTAACCTGACGGGGACGGTGTTGCACACCAATCTTGGCCGCGCATTGCAGGCGCAAGAAGCGATTGAGGC GGTAACGCAGGCGATGCGCGCGCCGGTGACGCTGGAATACGATTTGGATGGCGCCGGGCGGGGGCATCGCGACCGGGCAT TGGCGACGCTGTTATGCCGTATCACCGGGGCGGAGGACGCCTGTATCGTCAATAACAATGCGGCGGCGGTATTGCTGATG CTGGCAGCGACCGCCAGCGGCAAAGAGGTGGTGGTTTCGCGTGGCGAGCTGGTCGAAATCGGCGGCGCGTTTCGTATTCC GGATGTTATGCGCCAGGCGGGCTGTACGCTGCATGAAGTAGGCACCACCAACCGGACGCACGCGAAAGATTACCGTCAGG CGGTAAATGAAAATACCGGGCTGTTGATGAAGGTGCATACCAGTAATTACAGCATTGAGGGCTTTACCAAAACGGTAGAG GAAGCGGAACTGGCGGAAATCGGGCGAGAGCTGGATATTCCGGTGGTGGCGGATCTGGGCAGCGGTTCGCTGGTGGATTT AAGTCAATATGGCTTACCCAAAGAGCCGATGCCGCAGCAGCTCATTGCCGCAGGCGTCAGCCTGGTAAGCTTCTCCGGCG ATAAGTTGCTGGGCGGGCCGCAGGCCGGGATCATCGTCGGCAAAAAAGCGATGATTGCCCAACTGCAAAGCCATCCGCTG AAACGCGCCCTGCGTGCGGATAAAATGACGCTGGCGGCGCTGGAGGCAACGTTACGTCTGTATCTGCACCCGGAAGCGTT GGCGGAGAAATTACCCACGCTGCGTCTGTTAACCCGCAGCGAAGCGTCGATTCGCGAACAAGCGCAGCGGTTACAGGCGC GGCTGGCGGCACGTTACGGCGATGAATTTGCGCTGGAGGTTAAACCCTGCCTGTCGCAAATCGGCAGCGGTTCATTACCG GTAGACCGCCTTCCCAGCGCCGCCATGACCTTTACCCCGCACGACGGGCGCGGTAGTCGGCTGGAGGCGCTGGCGGCCCG CTGGCGCATGCTGCCTGTACCGGTCATTGGCCGAATTTATGATGGCCGTTTATGGCTGGATATGCGCTGTCTTGAAGACG AAAGCCGGTTTATGGAGATGATGCTGAAATGA
Upstream 100 bases:
>100_bases GACGCGCATTATGTCCGCCTGAGCAAACTCACGTTACAATCCCCCTTATGTCGATATCCCTCTCCCGCCAGGAGAGGGCC ACCAACAGCCAGGCATTTTC
Downstream 100 bases:
>100_bases TTATTGCAACTGCCGGACACGTAGACCACGGTAAAACGACGTTGCTCCAGGCGATTACCGGGGTCAATGCCGATCGCCTG CCGGAAGAGAAAAAACGCGG
Product: selenocysteine synthase
Products: NA
Alternate protein names: Selenocysteine synthase; Sec synthase; Selenocysteinyl-tRNA(Sec) synthase [H]
Number of amino acids: Translated: 463; Mature: 462
Protein sequence:
>463_residues MTSETRTLYSQLPAIDRLLHDSAFLSLRDRYGHTQVVDLLRRMLDDARDVIRNTQTLPDWYADWAQEAKLRLENAAQSAL RPVINLTGTVLHTNLGRALQAQEAIEAVTQAMRAPVTLEYDLDGAGRGHRDRALATLLCRITGAEDACIVNNNAAAVLLM LAATASGKEVVVSRGELVEIGGAFRIPDVMRQAGCTLHEVGTTNRTHAKDYRQAVNENTGLLMKVHTSNYSIEGFTKTVE EAELAEIGRELDIPVVADLGSGSLVDLSQYGLPKEPMPQQLIAAGVSLVSFSGDKLLGGPQAGIIVGKKAMIAQLQSHPL KRALRADKMTLAALEATLRLYLHPEALAEKLPTLRLLTRSEASIREQAQRLQARLAARYGDEFALEVKPCLSQIGSGSLP VDRLPSAAMTFTPHDGRGSRLEALAARWRMLPVPVIGRIYDGRLWLDMRCLEDESRFMEMMLK
Sequences:
>Translated_463_residues MTSETRTLYSQLPAIDRLLHDSAFLSLRDRYGHTQVVDLLRRMLDDARDVIRNTQTLPDWYADWAQEAKLRLENAAQSAL RPVINLTGTVLHTNLGRALQAQEAIEAVTQAMRAPVTLEYDLDGAGRGHRDRALATLLCRITGAEDACIVNNNAAAVLLM LAATASGKEVVVSRGELVEIGGAFRIPDVMRQAGCTLHEVGTTNRTHAKDYRQAVNENTGLLMKVHTSNYSIEGFTKTVE EAELAEIGRELDIPVVADLGSGSLVDLSQYGLPKEPMPQQLIAAGVSLVSFSGDKLLGGPQAGIIVGKKAMIAQLQSHPL KRALRADKMTLAALEATLRLYLHPEALAEKLPTLRLLTRSEASIREQAQRLQARLAARYGDEFALEVKPCLSQIGSGSLP VDRLPSAAMTFTPHDGRGSRLEALAARWRMLPVPVIGRIYDGRLWLDMRCLEDESRFMEMMLK >Mature_462_residues TSETRTLYSQLPAIDRLLHDSAFLSLRDRYGHTQVVDLLRRMLDDARDVIRNTQTLPDWYADWAQEAKLRLENAAQSALR PVINLTGTVLHTNLGRALQAQEAIEAVTQAMRAPVTLEYDLDGAGRGHRDRALATLLCRITGAEDACIVNNNAAAVLLML AATASGKEVVVSRGELVEIGGAFRIPDVMRQAGCTLHEVGTTNRTHAKDYRQAVNENTGLLMKVHTSNYSIEGFTKTVEE AELAEIGRELDIPVVADLGSGSLVDLSQYGLPKEPMPQQLIAAGVSLVSFSGDKLLGGPQAGIIVGKKAMIAQLQSHPLK RALRADKMTLAALEATLRLYLHPEALAEKLPTLRLLTRSEASIREQAQRLQARLAARYGDEFALEVKPCLSQIGSGSLPV DRLPSAAMTFTPHDGRGSRLEALAARWRMLPVPVIGRIYDGRLWLDMRCLEDESRFMEMMLK
Specific function: Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis [H]
COG id: COG1921
COG function: function code E; Selenocysteine synthase [seryl-tRNASer selenium transferase]
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the selA family [H]
Homologues:
Organism=Escherichia coli, GI2367248, Length=463, Percent_Identity=86.1771058315335, Blast_Score=776, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR018319 - InterPro: IPR004534 [H]
Pfam domain/function: PF03841 SelA [H]
EC number: =2.9.1.1 [H]
Molecular weight: Translated: 50859; Mature: 50728
Theoretical pI: Translated: 7.06; Mature: 7.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSETRTLYSQLPAIDRLLHDSAFLSLRDRYGHTQVVDLLRRMLDDARDVIRNTQTLPDW CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHH YADWAQEAKLRLENAAQSALRPVINLTGTVLHTNLGRALQAQEAIEAVTQAMRAPVTLEY HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE DLDGAGRGHRDRALATLLCRITGAEDACIVNNNAAAVLLMLAATASGKEVVVSRGELVEI CCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCCEEEEECCCEEEE GGAFRIPDVMRQAGCTLHEVGTTNRTHAKDYRQAVNENTGLLMKVHTSNYSIEGFTKTVE CCCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHCCCCCEEEEEECCCEEECHHHHHHH EAELAEIGRELDIPVVADLGSGSLVDLSQYGLPKEPMPQQLIAAGVSLVSFSGDKLLGGP HHHHHHCCCCCCCCEEEECCCCCEEEHHHCCCCCCCCHHHHHHHCHHHEEECCCCCCCCC QAGIIVGKKAMIAQLQSHPLKRALRADKMTLAALEATLRLYLHPEALAEKLPTLRLLTRS CCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHCCHHEEHHCC EASIREQAQRLQARLAARYGDEFALEVKPCLSQIGSGSLPVDRLPSAAMTFTPHDGRGSR HHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHCCCCCCCHHHCCCCEEEECCCCCCCHH LEALAARWRMLPVPVIGRIYDGRLWLDMRCLEDESRFMEMMLK HHHHHHHHHCCCCCHHCEEECCEEEEEEHHHHHHHHHHHHHCC >Mature Secondary Structure TSETRTLYSQLPAIDRLLHDSAFLSLRDRYGHTQVVDLLRRMLDDARDVIRNTQTLPDW CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHH YADWAQEAKLRLENAAQSALRPVINLTGTVLHTNLGRALQAQEAIEAVTQAMRAPVTLEY HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE DLDGAGRGHRDRALATLLCRITGAEDACIVNNNAAAVLLMLAATASGKEVVVSRGELVEI CCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCCEEEEECCCEEEE GGAFRIPDVMRQAGCTLHEVGTTNRTHAKDYRQAVNENTGLLMKVHTSNYSIEGFTKTVE CCCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHCCCCCEEEEEECCCEEECHHHHHHH EAELAEIGRELDIPVVADLGSGSLVDLSQYGLPKEPMPQQLIAAGVSLVSFSGDKLLGGP HHHHHHCCCCCCCCEEEECCCCCEEEHHHCCCCCCCCHHHHHHHCHHHEEECCCCCCCCC QAGIIVGKKAMIAQLQSHPLKRALRADKMTLAALEATLRLYLHPEALAEKLPTLRLLTRS CCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHCCHHEEHHCC EASIREQAQRLQARLAARYGDEFALEVKPCLSQIGSGSLPVDRLPSAAMTFTPHDGRGSR HHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHCCCCCCCHHHCCCCEEEECCCCCCCHH LEALAARWRMLPVPVIGRIYDGRLWLDMRCLEDESRFMEMMLK HHHHHHHHHCCCCCHHCEEECCEEEEEEHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA