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The map label for this gene is ygcI [H]

Identifier: 16766246

GI number: 16766246

Start: 3080086

End: 3080832

Strand: Reverse

Name: ygcI [H]

Synonym: STM2940

Alternate gene names: 16766246

Gene position: 3080832-3080086 (Counterclockwise)

Preceding gene: 16766247

Following gene: 16766245

Centisome position: 63.43

GC content: 57.97

Gene sequence:

>747_bases
ATGAGCCAATATCTGGTTTTTCAGCTTCACGGGCCGATGGCCTCCTGGGGCGTGGATGCGCCAGGCGAAGTGCGCCACAG
CCATGAGCTACCCTCGCGCTCGGCGCTGTTGGGGTTATTAGCTGCGGCGCTGGGAATTCGCCGCGATGAGGAGGAACGGC
TAAACGCCTTCAATCGTCATTACCAATTTTTGCTGTGCGCCAGTGGCAACCCGCGCTGGGCGCGGGATTATCACACGGTG
CAGATGCCGAAAGAGGTACGTAAGGCACGTTACTTCAGCCGCCGTGAAGAGTTGCAGGATCCTGAATTACTGAGCGCGCT
GATTTCCCGACGCGACTACTACACCGACGCCTGGTGGATGATCGCTGTCAGCGCGACGCCGGACGCGCCTTACACGTTGG
CGCAGCTTCAGACGTCGCTACAACATCCTGTATTCCCGCTGTATCTGGGGCGCAAAAGTCACCCTCTGGCGTTGCCGCTT
GCGCCGCAACTGCTGGAAGGGAGTGCGGCGGGTGTCCTGCGTGAAGCATATCGTTGGTATCAGGATCAATTCAATGCGCT
GAAACTGCCTCTCCCCAGATTACAGAACGAATGCTGGTGGGAAGGTGAACACGATGGCTTAACGGCGAGCAAAATTTTAC
GTCGTCGCGACATGCCGTTGAGCCGCCAGCAATGGCTGTTCGGTGAACGTAGCGTGAATCAGGGGCCGTGGCTCCGCAAG
GAGGACGCGTGTATCTCTCAAGAATAA

Upstream 100 bases:

>100_bases
GTTTATGGCCAGCGGACTGATACCGCCAGTTTCGACGTGATGAATCAGCAGGGAAGCATGGAAGACGTGCTTGACTTCAT
CTGCGCGTAAGGGGCGGCTT

Downstream 100 bases:

>100_bases
CGCTGCACACCAGCGAGCTTTCGCCGGCACAGCTCTTGCATCTGGTGGAGCGCGGCGAGTACGTGATGCACCAGTGGTTA
TGGGATCTCTTTCCCGGCAG

Product: cytoplasmic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 247

Protein sequence:

>248_residues
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTV
QMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQTSLQHPVFPLYLGRKSHPLALPL
APQLLEGSAAGVLREAYRWYQDQFNALKLPLPRLQNECWWEGEHDGLTASKILRRRDMPLSRQQWLFGERSVNQGPWLRK
EDACISQE

Sequences:

>Translated_248_residues
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTV
QMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQTSLQHPVFPLYLGRKSHPLALPL
APQLLEGSAAGVLREAYRWYQDQFNALKLPLPRLQNECWWEGEHDGLTASKILRRRDMPLSRQQWLFGERSVNQGPWLRK
EDACISQE
>Mature_247_residues
SQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQ
MPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQTSLQHPVFPLYLGRKSHPLALPLA
PQLLEGSAAGVLREAYRWYQDQFNALKLPLPRLQNECWWEGEHDGLTASKILRRRDMPLSRQQWLFGERSVNQGPWLRKE
DACISQE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082154, Length=168, Percent_Identity=34.5238095238095, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021124
- InterPro:   IPR013422
- InterPro:   IPR010147 [H]

Pfam domain/function: PF09704 Cas_Cas5d [H]

EC number: NA

Molecular weight: Translated: 28736; Mature: 28605

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRH
CCCEEEEEECCCHHHCCCCCCCHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHC
YQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWM
EEEEEECCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEE
IAVSATPDAPYTLAQLQTSLQHPVFPLYLGRKSHPLALPLAPQLLEGSAAGVLREAYRWY
EEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCEECCCCHHHHCCCHHHHHHHHHHHH
QDQFNALKLPLPRLQNECWWEGEHDGLTASKILRRRDMPLSRQQWLFGERSVNQGPWLRK
HHHCCEECCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCC
EDACISQE
CCCCCCCC
>Mature Secondary Structure 
SQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRH
CCEEEEEECCCHHHCCCCCCCHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHC
YQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWM
EEEEEECCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEE
IAVSATPDAPYTLAQLQTSLQHPVFPLYLGRKSHPLALPLAPQLLEGSAAGVLREAYRWY
EEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCEECCCCHHHHCCCHHHHHHHHHHHH
QDQFNALKLPLPRLQNECWWEGEHDGLTASKILRRRDMPLSRQQWLFGERSVNQGPWLRK
HHHCCEECCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCC
EDACISQE
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]