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The map label for this gene is ygcH [H]

Identifier: 16766245

GI number: 16766245

Start: 3079454

End: 3080104

Strand: Reverse

Name: ygcH [H]

Synonym: STM2939

Alternate gene names: 16766245

Gene position: 3080104-3079454 (Counterclockwise)

Preceding gene: 16766246

Following gene: 16766244

Centisome position: 63.41

GC content: 57.14

Gene sequence:

>651_bases
GTGTATCTCTCAAGAATAACGCTGCACACCAGCGAGCTTTCGCCGGCACAGCTCTTGCATCTGGTGGAGCGCGGCGAGTA
CGTGATGCACCAGTGGTTATGGGATCTCTTTCCCGGCAGCAAGGAACGGCAGTTTCTTTATCGCCGCGAAGAGTTACAGG
GCGCGTTTCGCTTTTTTGTTCTCTCACAGGAACAGCCTGCCGCCAGCGCGATTTTTGACGTGCAGACTCGCCCATTTGCG
CCAACGCTGAGCGCGGGGCAGACGCTGCGGTTTAACCTGCGCGCCAATCCGACGGTTTGCAAAAACGGCAAGCGTCACGA
TTTGCTGATGGAGGCGAAACGCCAGCGTAAAACGCAGGGTGATAGCCAGGATATTTGGTCTTATCAGCAGCAGGCGGCGC
TGACGTGGTTGGCGCGCCAGGGGGAGCAAAATGGCTTTACTCTGCGCGAGGCGAGCGTTGATGCTTATCGGCAGCAGCAG
ATACGTCGCGGGAAAGATCGGCAGATGATTCAGTTTAGCAGCGTGGACTATACCGGCGTGCTGGTGATTAACGAACCCGC
GCTTTTCCTGCAACGTCTGGCGCAGGGGTTCGGTAAAAGCCGGGCGTTTGGCTGCGGAATGATGATGATCAAACCTGGAG
ACGACGCGTGA

Upstream 100 bases:

>100_bases
GCAAAATTTTACGTCGTCGCGACATGCCGTTGAGCCGCCAGCAATGGCTGTTCGGTGAACGTAGCGTGAATCAGGGGCCG
TGGCTCCGCAAGGAGGACGC

Downstream 100 bases:

>100_bases
CGTTCGTGCCGCTCAACCCGATCCCGTTAAAAGATCGAACCTCAATGATCTTCCTCCAGTACGGTCAGATTGACGTGCTG
GATGGGGCATTCGTGCTGAT

Product: cytoplasmic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGSKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFA
PTLSAGQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFTLREASVDAYRQQQ
IRRGKDRQMIQFSSVDYTGVLVINEPALFLQRLAQGFGKSRAFGCGMMMIKPGDDA

Sequences:

>Translated_216_residues
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGSKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFA
PTLSAGQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFTLREASVDAYRQQQ
IRRGKDRQMIQFSSVDYTGVLVINEPALFLQRLAQGFGKSRAFGCGMMMIKPGDDA
>Mature_216_residues
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGSKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFA
PTLSAGQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFTLREASVDAYRQQQ
IRRGKDRQMIQFSSVDYTGVLVINEPALFLQRLAQGFGKSRAFGCGMMMIKPGDDA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789114, Length=219, Percent_Identity=27.8538812785388, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010179 [H]

Pfam domain/function: PF08798 CRISPR_assoc [H]

EC number: NA

Molecular weight: Translated: 24909; Mature: 24909

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGSKERQFLYRREELQGAFRFFV
CCCEEEEEECCCCCHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEEEEE
LSQEQPAASAIFDVQTRPFAPTLSAGQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKTQG
ECCCCCCHHHEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCC
DSQDIWSYQQQAALTWLARQGEQNGFTLREASVDAYRQQQIRRGKDRQMIQFSSVDYTGV
CCHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHCCCCCCEEEECCCCEEEE
LVINEPALFLQRLAQGFGKSRAFGCGMMMIKPGDDA
EEECCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCC
>Mature Secondary Structure
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGSKERQFLYRREELQGAFRFFV
CCCEEEEEECCCCCHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEEEEE
LSQEQPAASAIFDVQTRPFAPTLSAGQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKTQG
ECCCCCCHHHEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCC
DSQDIWSYQQQAALTWLARQGEQNGFTLREASVDAYRQQQIRRGKDRQMIQFSSVDYTGV
CCHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHCCCCCCEEEECCCCEEEE
LVINEPALFLQRLAQGFGKSRAFGCGMMMIKPGDDA
EEECCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]