| Definition | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chromosome, complete genome. |
|---|---|
| Accession | NC_003197 |
| Length | 4,857,432 |
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The map label for this gene is 16766019
Identifier: 16766019
GI number: 16766019
Start: 2853995
End: 2855569
Strand: Reverse
Name: 16766019
Synonym: STM2706
Alternate gene names: NA
Gene position: 2855569-2853995 (Counterclockwise)
Preceding gene: 16766020
Following gene: 16766018
Centisome position: 58.79
GC content: 52.44
Gene sequence:
>1575_bases ATGAGCGCAAAATTTTATACCCTGCTGACGGAGATCGGCGCGGCGAAACTGGCAAGCGCCGCCGCGCTCGGTGTCCCGCT GAAAATTACCCATATGGCGGTGGGCGACGGTGGCGGTGTGCTGCCCACACCCAGCGCGCAACAGACCGCGTTAGTTGCTG AGAAGCGTCGAGCAGCGCTGAATATGCTGTATATCGACCCGCAGAACAGCAGCCAGATTATTGCTGAGCAAGTGATCCCG GAAACTGAGGGGGGATGGTGGATTCGTGAGGTCGGCCTGTTTGATGAAACCGGCGCACTGATCGCCGTGGGTAACTGCCC TGAGAGCTACAAGCCGCAGCTGACAGAAGGGAGCGGACGTACGCAGACCGTGCGCATGGTACTGATTACCAGTAGCACCG ATAACATCACCCTGAAAATTGACCCTGCAGTAGTGCTGGCAACCCGTAAATATGTAGATGATAAGGCGCTGGAGCTGAAG GTATATGTAGACGACCTGATGGCAAAGCATCTTGCTGCGCCGGACCCGCATTCACAGTATGCGCAGAAGGACAGCCCGAC ACTCACAGGGATTCCAAAGGTACCGACGCCAGCGGCGGGTAACAGCACTAAACAGATTGCGAACACGGAATTTGTGGCAT CGTCTATTGCGGCAATGGTGGATTCTGCGCCTGCAGCACTGGATACGCTGAACGAGCTGGCAGCGGCTCTGGGGAATGAC CCGAACTTTGCCACGACGATGATAAACGCTCTGGCTGGAAAGCAACCGCTGGACAATACACTGACGAATTTAAGCGGAAA AGATATCGCCGGCCTTCTCACATACCTCGGTTTAGGCGAAACAGCAAAGCAAGCTGCGGGCGCAGTCCAGAAAACTGGCG ATGAGATGAGCGGGAAGTTAACCCTGCCACAGACATCTTCCTTCGGCGTGAATACTAATAACACACTGGGCGGTAGTTCC ATCGCTATTGGTGATAACGATACCGGCTTTAAACAGAATGGTGACGGGATACTGGATACGTTTGCGAATAGCCAGCACAC CGTTCGTGTCGCTCCCGGTGAAATGATGGTTCTGGGAGCTATTCGCGCAGGCAAAGAAAAAAAACTGTCACTGACGAGTA ATAATAATTCGACAATGACAGCCACGTTTAATTTATGGGGCGACGCAAACAGGCCTACAGTGATTGAACTGGACGACGAC CAGGGATGGCATTTATACAGCCAGCGAAATCCTGATGGTTCGATTGTCTTTACGGTCAATGGCGATATCACCGCTAACAC GCTTCGTGCAGGCGGGGCCATCTATCAGAATAACGGCGACATCTTTGGTTCTGTCTGGGGGAATAGCTGGCTGAGTCTGT GGATTAATAATAATTTCGTCGCAGATGTTCAGTTAGGGGCTGGCACATCAGTGACTACCTGGAACAATGCAGGTTCCTGG CCTAACACTCCCGGATATGTAGTTACCTCCGTCTGGAAAGATGCACAAGGCGAAAATATTGATGGTATTAATTATGCGCC TTTGCAAAAACGAGTCGGGAATCAGTGGTATACCGTACAAGGGGGAACGGCATAA
Upstream 100 bases:
>100_bases AAATCACGGTGTATCCGTATATCAATGAAACGATTGTTTCCGGCGGCACCGCACATGAAGGCGGGGCAGTCCATGTTATT GACACAATGAGAGTGAATCC
Downstream 100 bases:
>100_bases TGAAAAAATATCAGAATATCAAAAATTTCAGACTTATTGACGACCCCGTAAGCAGGGGTAAAACTCAGGCCGAAATAAAT ATAGGTGCATATTTCCTGGA
Product: phage tail-like protein
Products: NA
Alternate protein names: Phage Tail Fiber Protein; Tail Collar Domain Protein; Phage-Related Tail Fibre Protein-Like Protein; Tail Fiber Protein H; Variable Tail Fibre Protein; Bacteriophage Tail Fiber Protein; Side Tail Fiber Protein; Tail Fiber-Related Protein; Phage Tail Collar Domain Protein; Phage Tail Fiber Protein H; Phage Tail Collar Domain-Containing Protein; Bacteriophage Tail Protein; Phage Tail Fibre Protein; Gifsy-2 Prophage Tail Fiber Protein; Variable Tail Fiber Protein; Tail Fiber Domain Protein; Tail Fiber Domain-Containing Protein; Side Tail Phage Protein; Bacteriophage Protein; Bacteriophage Variable Tail Fiber Protein H; Phage Tail Fiber Domain Protein; Phage Variable Tail Fiber Protein; Phage Tail Collar; Phage Protein Gph; Phage-Related Tail Fiber Protein-Like Protein; E14 Prophage; Bacteriophage Variable Tail Fibre Protein; Tail Fiber Repeat 2 Protein; Prophage Tail Fiber Protein; Phage Protein GpH; Fels-2 Prophage Pin; Phage Variable Tail Fibre Protein; Phage Tail Fiber-Like Protein; Tail Protein; Phage Tail Protein; Tail Fiber Protein-Like Protein; Phage P2 Tail Fiber GpH-Like Protein; Phage-Like Tail Fibre Protein; Prophage; Phage-Like Tail Fiber-Like Protein; Tail Fiber Repeat 2-Containing Protein; Phage Tail-Like Protein; LOW QUALITY PROTEIN GpH; Bacteriophage Large Tail Fiber Protein; Tail Fiber Protein GpH
Number of amino acids: Translated: 524; Mature: 523
Protein sequence:
>524_residues MSAKFYTLLTEIGAAKLASAAALGVPLKITHMAVGDGGGVLPTPSAQQTALVAEKRRAALNMLYIDPQNSSQIIAEQVIP ETEGGWWIREVGLFDETGALIAVGNCPESYKPQLTEGSGRTQTVRMVLITSSTDNITLKIDPAVVLATRKYVDDKALELK VYVDDLMAKHLAAPDPHSQYAQKDSPTLTGIPKVPTPAAGNSTKQIANTEFVASSIAAMVDSAPAALDTLNELAAALGND PNFATTMINALAGKQPLDNTLTNLSGKDIAGLLTYLGLGETAKQAAGAVQKTGDEMSGKLTLPQTSSFGVNTNNTLGGSS IAIGDNDTGFKQNGDGILDTFANSQHTVRVAPGEMMVLGAIRAGKEKKLSLTSNNNSTMTATFNLWGDANRPTVIELDDD QGWHLYSQRNPDGSIVFTVNGDITANTLRAGGAIYQNNGDIFGSVWGNSWLSLWINNNFVADVQLGAGTSVTTWNNAGSW PNTPGYVVTSVWKDAQGENIDGINYAPLQKRVGNQWYTVQGGTA
Sequences:
>Translated_524_residues MSAKFYTLLTEIGAAKLASAAALGVPLKITHMAVGDGGGVLPTPSAQQTALVAEKRRAALNMLYIDPQNSSQIIAEQVIP ETEGGWWIREVGLFDETGALIAVGNCPESYKPQLTEGSGRTQTVRMVLITSSTDNITLKIDPAVVLATRKYVDDKALELK VYVDDLMAKHLAAPDPHSQYAQKDSPTLTGIPKVPTPAAGNSTKQIANTEFVASSIAAMVDSAPAALDTLNELAAALGND PNFATTMINALAGKQPLDNTLTNLSGKDIAGLLTYLGLGETAKQAAGAVQKTGDEMSGKLTLPQTSSFGVNTNNTLGGSS IAIGDNDTGFKQNGDGILDTFANSQHTVRVAPGEMMVLGAIRAGKEKKLSLTSNNNSTMTATFNLWGDANRPTVIELDDD QGWHLYSQRNPDGSIVFTVNGDITANTLRAGGAIYQNNGDIFGSVWGNSWLSLWINNNFVADVQLGAGTSVTTWNNAGSW PNTPGYVVTSVWKDAQGENIDGINYAPLQKRVGNQWYTVQGGTA >Mature_523_residues SAKFYTLLTEIGAAKLASAAALGVPLKITHMAVGDGGGVLPTPSAQQTALVAEKRRAALNMLYIDPQNSSQIIAEQVIPE TEGGWWIREVGLFDETGALIAVGNCPESYKPQLTEGSGRTQTVRMVLITSSTDNITLKIDPAVVLATRKYVDDKALELKV YVDDLMAKHLAAPDPHSQYAQKDSPTLTGIPKVPTPAAGNSTKQIANTEFVASSIAAMVDSAPAALDTLNELAAALGNDP NFATTMINALAGKQPLDNTLTNLSGKDIAGLLTYLGLGETAKQAAGAVQKTGDEMSGKLTLPQTSSFGVNTNNTLGGSSI AIGDNDTGFKQNGDGILDTFANSQHTVRVAPGEMMVLGAIRAGKEKKLSLTSNNNSTMTATFNLWGDANRPTVIELDDDQ GWHLYSQRNPDGSIVFTVNGDITANTLRAGGAIYQNNGDIFGSVWGNSWLSLWINNNFVADVQLGAGTSVTTWNNAGSWP NTPGYVVTSVWKDAQGENIDGINYAPLQKRVGNQWYTVQGGTA
Specific function: Unknown
COG id: COG5301
COG function: function code R; Phage-related tail fibre protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55306; Mature: 55174
Theoretical pI: Translated: 4.69; Mature: 4.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAKFYTLLTEIGAAKLASAAALGVPLKITHMAVGDGGGVLPTPSAQQTALVAEKRRAAL CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCEE NMLYIDPQNSSQIIAEQVIPETEGGWWIREVGLFDETGALIAVGNCPESYKPQLTEGSGR EEEEECCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCC TQTVRMVLITSSTDNITLKIDPAVVLATRKYVDDKALELKVYVDDLMAKHLAAPDPHSQY CEEEEEEEEECCCCEEEEEECCEEEEEEHHHCCCCEEEEEEEHHHHHHHHHCCCCCHHHH AQKDSPTLTGIPKVPTPAAGNSTKQIANTEFVASSIAAMVDSAPAALDTLNELAAALGND HCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC PNFATTMINALAGKQPLDNTLTNLSGKDIAGLLTYLGLGETAKQAAGAVQKTGDEMSGKL CCHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEE TLPQTSSFGVNTNNTLGGSSIAIGDNDTGFKQNGDGILDTFANSQHTVRVAPGEMMVLGA ECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEECCCCCCEEEEECCCCEEEEEE IRAGKEKKLSLTSNNNSTMTATFNLWGDANRPTVIELDDDQGWHLYSQRNPDGSIVFTVN ECCCCCCEEEEECCCCCEEEEEEEEECCCCCCEEEEECCCCCEEEEECCCCCCCEEEEEC GDITANTLRAGGAIYQNNGDIFGSVWGNSWLSLWINNNFVADVQLGAGTSVTTWNNAGSW CCEEEEEEECCCEEEECCCCEEEEECCCCEEEEEECCCEEEEEEECCCCEEEECCCCCCC PNTPGYVVTSVWKDAQGENIDGINYAPLQKRVGNQWYTVQGGTA CCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHCCEEEEEECCCC >Mature Secondary Structure SAKFYTLLTEIGAAKLASAAALGVPLKITHMAVGDGGGVLPTPSAQQTALVAEKRRAAL CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCEE NMLYIDPQNSSQIIAEQVIPETEGGWWIREVGLFDETGALIAVGNCPESYKPQLTEGSGR EEEEECCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCC TQTVRMVLITSSTDNITLKIDPAVVLATRKYVDDKALELKVYVDDLMAKHLAAPDPHSQY CEEEEEEEEECCCCEEEEEECCEEEEEEHHHCCCCEEEEEEEHHHHHHHHHCCCCCHHHH AQKDSPTLTGIPKVPTPAAGNSTKQIANTEFVASSIAAMVDSAPAALDTLNELAAALGND HCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC PNFATTMINALAGKQPLDNTLTNLSGKDIAGLLTYLGLGETAKQAAGAVQKTGDEMSGKL CCHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEE TLPQTSSFGVNTNNTLGGSSIAIGDNDTGFKQNGDGILDTFANSQHTVRVAPGEMMVLGA ECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEECCCCCCEEEEECCCCEEEEEE IRAGKEKKLSLTSNNNSTMTATFNLWGDANRPTVIELDDDQGWHLYSQRNPDGSIVFTVN ECCCCCCEEEEECCCCCEEEEEEEEECCCCCCEEEEECCCCCEEEEECCCCCCCEEEEEC GDITANTLRAGGAIYQNNGDIFGSVWGNSWLSLWINNNFVADVQLGAGTSVTTWNNAGSW CCEEEEEEECCCEEEECCCCEEEEECCCCEEEEEECCCEEEEEEECCCCEEEECCCCCCC PNTPGYVVTSVWKDAQGENIDGINYAPLQKRVGNQWYTVQGGTA CCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHCCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA