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The map label for this gene is citD [H]

Identifier: 16764000

GI number: 16764000

Start: 686273

End: 686569

Strand: Reverse

Name: citD [H]

Synonym: STM0623

Alternate gene names: 16764000

Gene position: 686569-686273 (Counterclockwise)

Preceding gene: 16764001

Following gene: 16763999

Centisome position: 14.13

GC content: 56.9

Gene sequence:

>297_bases
ATGAAAATAAACCAGCTAGCCGTCGCAGGCACGCTTGAGTCCGGCGATGTGATGATACGCATTGCGCCGCTCGATACGCA
GGATATTGACCTGCAAATCAACAGTAGCGTTGAAAAACAGTTTGGCGAGGCCATTCGCGCCACCATCCTGGAGGTGCTTT
CTCGCTACGACGTGCGCGGCGTACAACTGAACGTCGATGATAAAGGCGCTCTGGACTGCATTTTGCGCGCCCGACTGGAA
ACGCTACTGGCGCGCGCCAGCGGTATTGCCGCTCTGCCCTGGGAGGATCGCCAATGA

Upstream 100 bases:

>100_bases
TTCCCGACGCCACCCTGCGCTATTTGCAGGGCATGGTCGAACGCCATCCGGGCAGCGCGGCAGCCCGTCAAAAGTCCCCC
GTATTAGCAACAGGTGAAAA

Downstream 100 bases:

>100_bases
TTTCCGCCTCTCTGCAACAACGTAAAACCCGCACCCGCCGCAGTATGTTATTCGTACCGGGCGCCAACGCGGCGATGGTG
AGCAATTCGTTTATCTACCC

Product: citrate lyase subunit gamma

Products: acetate; oxaloacetate

Alternate protein names: Citrate lyase gamma chain 1 [H]

Number of amino acids: Translated: 98; Mature: 98

Protein sequence:

>98_residues
MKINQLAVAGTLESGDVMIRIAPLDTQDIDLQINSSVEKQFGEAIRATILEVLSRYDVRGVQLNVDDKGALDCILRARLE
TLLARASGIAALPWEDRQ

Sequences:

>Translated_98_residues
MKINQLAVAGTLESGDVMIRIAPLDTQDIDLQINSSVEKQFGEAIRATILEVLSRYDVRGVQLNVDDKGALDCILRARLE
TLLARASGIAALPWEDRQ
>Mature_98_residues
MKINQLAVAGTLESGDVMIRIAPLDTQDIDLQINSSVEKQFGEAIRATILEVLSRYDVRGVQLNVDDKGALDCILRARLE
TLLARASGIAALPWEDRQ

Specific function: Covalent carrier of the coenzyme of citrate lyase [H]

COG id: COG3052

COG function: function code C; Citrate lyase, gamma subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CitD family [H]

Homologues:

Organism=Escherichia coli, GI1786834, Length=98, Percent_Identity=90.8163265306122, Blast_Score=177, Evalue=8e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006495
- InterPro:   IPR009662
- ProDom:   PD015389 [H]

Pfam domain/function: PF06857 MdcD [H]

EC number: 4.1.3.6

Molecular weight: Translated: 10778; Mature: 10778

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKINQLAVAGTLESGDVMIRIAPLDTQDIDLQINSSVEKQFGEAIRATILEVLSRYDVRG
CCCCCEEEEEEECCCCEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCC
VQLNVDDKGALDCILRARLETLLARASGIAALPWEDRQ
EEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCC
>Mature Secondary Structure
MKINQLAVAGTLESGDVMIRIAPLDTQDIDLQINSSVEKQFGEAIRATILEVLSRYDVRG
CCCCCEEEEEEECCCCEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCC
VQLNVDDKGALDCILRARLETLLARASGIAALPWEDRQ
EEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: citrate

Specific reaction: citrate = acetate + oxaloacetate

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA