Click here to switch to the map view.

The map label for this gene is ybdQ

Identifier: 16763991

GI number: 16763991

Start: 677372

End: 677800

Strand: Reverse

Name: ybdQ

Synonym: STM0614

Alternate gene names: 16763991

Gene position: 677800-677372 (Counterclockwise)

Preceding gene: 16763993

Following gene: 16763984

Centisome position: 13.95

GC content: 51.98

Gene sequence:

>429_bases
ATGTATAAGACAATCATTATGCCGGTTGATGTTTTTGAAATGGAACTTAGCGATAAAGCCATTCGCCACGCTGAGTTTCT
GGCGCAACAGGATGGCGTCATTCATCTGTTGCATGTACTGCCTGGGTCCGCGAGCATGAGTCTGCACCGCTTTGCCGCCG
ACGTGCGTCGCTTTGAAGAACATTTACAGCATGAGGCGGAAACGCGTCTGCAAACGATGGTGGGACACTTCAGTATCGAT
CCTTCACGAATTAAAACGCATGTTCGCTTTGGTAGCGTGCGCGATGTCGTCAATGAGATGGGCGAAGAACTGGATGCGGA
TGTCGTGGTAATCGGTTCGCGTAATCCGTCCATCACGACACACCTGTTGGGGTCTAACGCCTCAAGCGTGGTGCGCCATG
CGACGCTGCCCGTATTGGTTGTGCGTTAA

Upstream 100 bases:

>100_bases
TCAGGTTGCCGTAATATTTAAAATTGCCAGACAAATAGCAGAAAGAAACATTATTATATGCTTGAATAAATTCAGTATTG
ATTAACAGGGAGTAACGGGT

Downstream 100 bases:

>100_bases
CTCTGGTGGCTAAAAACTTACACGCCCTGCCAGGTCACGCCTGGCAGGGCTTTTTACTGCATCATCGTTAGTACAAATGC
CCGATATTCACAATAGTACT

Product: universal stress protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MYKTIIMPVDVFEMELSDKAIRHAEFLAQQDGVIHLLHVLPGSASMSLHRFAADVRRFEEHLQHEAETRLQTMVGHFSID
PSRIKTHVRFGSVRDVVNEMGEELDADVVVIGSRNPSITTHLLGSNASSVVRHATLPVLVVR

Sequences:

>Translated_142_residues
MYKTIIMPVDVFEMELSDKAIRHAEFLAQQDGVIHLLHVLPGSASMSLHRFAADVRRFEEHLQHEAETRLQTMVGHFSID
PSRIKTHVRFGSVRDVVNEMGEELDADVVVIGSRNPSITTHLLGSNASSVVRHATLPVLVVR
>Mature_142_residues
MYKTIIMPVDVFEMELSDKAIRHAEFLAQQDGVIHLLHVLPGSASMSLHRFAADVRRFEEHLQHEAETRLQTMVGHFSID
PSRIKTHVRFGSVRDVVNEMGEELDADVVVIGSRNPSITTHLLGSNASSVVRHATLPVLVVR

Specific function: Unknown

COG id: COG0589

COG function: function code T; Universal stress protein UspA and related nucleotide-binding proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the universal stress protein A family

Homologues:

Organism=Escherichia coli, GI1786824, Length=142, Percent_Identity=89.4366197183099, Blast_Score=260, Evalue=2e-71,
Organism=Escherichia coli, GI87081893, Length=146, Percent_Identity=38.3561643835616, Blast_Score=97, Evalue=4e-22,

Paralogues:

None

Copy number: 180 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). 120 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): USPG_SALTI (P67094)

Other databases:

- EMBL:   AL627267
- EMBL:   AE014613
- RefSeq:   NP_455191.1
- RefSeq:   NP_805995.1
- ProteinModelPortal:   P67094
- SMR:   P67094
- PRIDE:   P67094
- GeneID:   1067289
- GeneID:   1247123
- GenomeReviews:   AE014613_GR
- GenomeReviews:   AL513382_GR
- KEGG:   stt:t2253
- KEGG:   sty:STY0662
- HOGENOM:   HBG733992
- OMA:   HAEFLTQ
- ProtClustDB:   PRK15456
- BioCyc:   SENT209261:T2253-MONOMER
- BioCyc:   SENT220341:STY0662-MONOMER
- InterPro:   IPR014729
- InterPro:   IPR006015
- InterPro:   IPR006016
- Gene3D:   G3DSA:3.40.50.620
- PRINTS:   PR01438

Pfam domain/function: PF00582 Usp

EC number: NA

Molecular weight: Translated: 15902; Mature: 15902

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKTIIMPVDVFEMELSDKAIRHAEFLAQQDGVIHLLHVLPGSASMSLHRFAADVRRFEE
CCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH
HLQHEAETRLQTMVGHFSIDPSRIKTHVRFGSVRDVVNEMGEELDADVVVIGSRNPSITT
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEE
HLLGSNASSVVRHATLPVLVVR
EEECCCHHHHHHHCCCCEEEEC
>Mature Secondary Structure
MYKTIIMPVDVFEMELSDKAIRHAEFLAQQDGVIHLLHVLPGSASMSLHRFAADVRRFEE
CCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH
HLQHEAETRLQTMVGHFSIDPSRIKTHVRFGSVRDVVNEMGEELDADVVVIGSRNPSITT
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEE
HLLGSNASSVVRHATLPVLVVR
EEECCCHHHHHHHCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504