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The map label for this gene is rnk [H]

Identifier: 16763993

GI number: 16763993

Start: 679344

End: 679754

Strand: Reverse

Name: rnk [H]

Synonym: STM0616

Alternate gene names: 16763993

Gene position: 679754-679344 (Counterclockwise)

Preceding gene: 16763994

Following gene: 16763991

Centisome position: 13.99

GC content: 58.39

Gene sequence:

>411_bases
ATGTCCAGACCCACTATTATCATTAACGACCTTGACGCCGAACGTATTGATCGTCTTCTGGAACAGCCTGCGTATGCGGA
TCTGCCGATTGCCGACGCGCTCAACGCCGAACTGGATCGCGCGCAAATGTGTTCGCCACAAGAGATGCCGAACGATGTCG
TCACCATGAACAGCCGCGTTAAATTCCGCAATTTGAGCGATGGTGAAACACGCGTGCGGACGCTGGTGTACCCCGCCAAT
ATGACGGACAGCAGTACCCAGCTTTCGGTAATGGCGCCCGTCGGCGCGGCGTTGCTGGGACTGCGCGTCGGCGACACCAT
TCACTGGGAACTGCCGGGCGGCGCCTCCACCCATCTCGAAGTGCTGGAACTCGAATATCAGCCTGAAGCCGCGGGCGACT
TCCTGCGTTAA

Upstream 100 bases:

>100_bases
TATCATCATGAGAGTTAAACCCTCGCCGCCAGACGGTGAGGGTTTTCTTTTGGGACCATTTACCTGCACTACTCGCAGTA
TCGATGACATGGAGTAAGAA

Downstream 100 bases:

>100_bases
ATCATCTGCATAAGCGTTAATGCGTTTACACAGAGGATGCCTGCGCATCCTCTTTCCGTTAGCCCTTTCATTTCTGCCTG
CTTCAGACAACGCCGCCTGG

Product: nucleoside diphosphate kinase regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 135

Protein sequence:

>136_residues
MSRPTIIINDLDAERIDRLLEQPAYADLPIADALNAELDRAQMCSPQEMPNDVVTMNSRVKFRNLSDGETRVRTLVYPAN
MTDSSTQLSVMAPVGAALLGLRVGDTIHWELPGGASTHLEVLELEYQPEAAGDFLR

Sequences:

>Translated_136_residues
MSRPTIIINDLDAERIDRLLEQPAYADLPIADALNAELDRAQMCSPQEMPNDVVTMNSRVKFRNLSDGETRVRTLVYPAN
MTDSSTQLSVMAPVGAALLGLRVGDTIHWELPGGASTHLEVLELEYQPEAAGDFLR
>Mature_135_residues
SRPTIIINDLDAERIDRLLEQPAYADLPIADALNAELDRAQMCSPQEMPNDVVTMNSRVKFRNLSDGETRVRTLVYPANM
TDSSTQLSVMAPVGAALLGLRVGDTIHWELPGGASTHLEVLELEYQPEAAGDFLR

Specific function: Rnk and sspA can functionally replace P.aeruginosa alginate regulatory gene algR2 [H]

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786827, Length=135, Percent_Identity=91.8518518518518, Blast_Score=256, Evalue=3e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001437 [H]

Pfam domain/function: PF01272 GreA_GreB [H]

EC number: NA

Molecular weight: Translated: 14994; Mature: 14863

Theoretical pI: Translated: 4.22; Mature: 4.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRPTIIINDLDAERIDRLLEQPAYADLPIADALNAELDRAQMCSPQEMPNDVVTMNSRV
CCCCEEEEECCCHHHHHHHHHCCCCCCCCCHHHHCCCCCHHHCCCCCCCCCCEEEECCEE
KFRNLSDGETRVRTLVYPANMTDSSTQLSVMAPVGAALLGLRVGDTIHWELPGGASTHLE
EEECCCCCCCEEEEEEEECCCCCCCCEEEEECCHHHHHHHEECCCEEEEECCCCCCCCEE
VLELEYQPEAAGDFLR
EEEEEECCCCCCCCCC
>Mature Secondary Structure 
SRPTIIINDLDAERIDRLLEQPAYADLPIADALNAELDRAQMCSPQEMPNDVVTMNSRV
CCCEEEEECCCHHHHHHHHHCCCCCCCCCHHHHCCCCCHHHCCCCCCCCCCEEEECCEE
KFRNLSDGETRVRTLVYPANMTDSSTQLSVMAPVGAALLGLRVGDTIHWELPGGASTHLE
EEECCCCCCCEEEEEEEECCCCCCCCEEEEECCHHHHHHHEECCCEEEEECCCCCCCCEE
VLELEYQPEAAGDFLR
EEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]