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The map label for this gene is ykgD [H]

Identifier: 16763940

GI number: 16763940

Start: 619258

End: 620112

Strand: Reverse

Name: ykgD [H]

Synonym: STM0563

Alternate gene names: 16763940

Gene position: 620112-619258 (Counterclockwise)

Preceding gene: 16763944

Following gene: 16763938

Centisome position: 12.77

GC content: 58.25

Gene sequence:

>855_bases
ATGGATGCGCTTAGTCGGCTATTGACGCTTAACGCCCCTCAGGGCTCAATCGACAAGAATTGCCCGTTAGGCGGCGACTG
GCAGTTGCCGCACGCCGCTGGCGAACTATCGGTGATTCGCTGGCATACCGTTACGCAGGGCGAAGCGCAACTGGAAATGC
CTACCGGCGACGCCATGACGCTTACGCCGGGAAAGGTGGTGATTCTGCCGCAAAACTCCGCCCACCGTTTGCGCCAGTCT
GGCGAATCACCGACACATATCGTCTGCGGTAGTCTACGTCTGCACACGACGTCACGTTATTTCCTTACCGCGTTGCCGGA
AGTGTTATGTCTTGCCCCGCCGCCGCATAGCCCCGCCAGTATCTGGATTAACGCCACCATTTTGCTGTTACAGCAGGAGT
CAGAACGCCATTTACCTGGCGCTGATGTCTTATACAGTCAGCAGTGCGCCACGCTGTTTACCCTCGCCGTTCGCGACTGG
CTATCGCAGGCTGGCACGGCGAAAAGCGTGCTCAATTTATTACTGCATCCCCGGCTGGGCCGCGTGATCCTTCACATGCT
GGAAACACCGGCGCATCCCTGGACGGTCGAAACGCTGGCGCAACGGGTACACATGTCGCGGGCGAGCTTCGCCCAGCTAT
TTCGCGACGTGTCCGCTACAACGCCCTTAGCCGTGTTAACAACGCTGCGCCTGCAAATCGCCGCCCAGACCCTGTCGCGT
GAAGTGCTGCCGGTGATGGTGATTGCCGAGTCGGTAGGTTATGCGAGCGAATCTTCTTTTCACAAAGCTTTTGTCCGTGA
ATTCGGTTGTACACCAGGCGAGTACCGCAAACGGGTCAGCGCGCTCGGACGATAA

Upstream 100 bases:

>100_bases
GCAAAAACAAGGGTAGAAATGACATTGAGTCCGAAATATAGTGAACAGATACAGAAATGGTTATCTCTAGTTTTGAAAAT
AAATCTGTTCTGGAGTCTAT

Downstream 100 bases:

>100_bases
ACGTACGCTGAACCCGCCTGCAGTTTGACGCCGCAGGCGGGGTGCACACGTTATGCCGCAAGGCGACGATGCCTGCGCAG
CCACATCAGCTTGTAGGCTG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MDALSRLLTLNAPQGSIDKNCPLGGDWQLPHAAGELSVIRWHTVTQGEAQLEMPTGDAMTLTPGKVVILPQNSAHRLRQS
GESPTHIVCGSLRLHTTSRYFLTALPEVLCLAPPPHSPASIWINATILLLQQESERHLPGADVLYSQQCATLFTLAVRDW
LSQAGTAKSVLNLLLHPRLGRVILHMLETPAHPWTVETLAQRVHMSRASFAQLFRDVSATTPLAVLTTLRLQIAAQTLSR
EVLPVMVIAESVGYASESSFHKAFVREFGCTPGEYRKRVSALGR

Sequences:

>Translated_284_residues
MDALSRLLTLNAPQGSIDKNCPLGGDWQLPHAAGELSVIRWHTVTQGEAQLEMPTGDAMTLTPGKVVILPQNSAHRLRQS
GESPTHIVCGSLRLHTTSRYFLTALPEVLCLAPPPHSPASIWINATILLLQQESERHLPGADVLYSQQCATLFTLAVRDW
LSQAGTAKSVLNLLLHPRLGRVILHMLETPAHPWTVETLAQRVHMSRASFAQLFRDVSATTPLAVLTTLRLQIAAQTLSR
EVLPVMVIAESVGYASESSFHKAFVREFGCTPGEYRKRVSALGR
>Mature_284_residues
MDALSRLLTLNAPQGSIDKNCPLGGDWQLPHAAGELSVIRWHTVTQGEAQLEMPTGDAMTLTPGKVVILPQNSAHRLRQS
GESPTHIVCGSLRLHTTSRYFLTALPEVLCLAPPPHSPASIWINATILLLQQESERHLPGADVLYSQQCATLFTLAVRDW
LSQAGTAKSVLNLLLHPRLGRVILHMLETPAHPWTVETLAQRVHMSRASFAQLFRDVSATTPLAVLTTLRLQIAAQTLSR
EVLPVMVIAESVGYASESSFHKAFVREFGCTPGEYRKRVSALGR

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=283, Percent_Identity=71.3780918727915, Blast_Score=410, Evalue=1e-116,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 31125; Mature: 31125

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDALSRLLTLNAPQGSIDKNCPLGGDWQLPHAAGELSVIRWHTVTQGEAQLEMPTGDAMT
CCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEECCCCCEEE
LTPGKVVILPQNSAHRLRQSGESPTHIVCGSLRLHTTSRYFLTALPEVLCLAPPPHSPAS
ECCCEEEEECCCHHHHHHHCCCCCCEEEECCEEEECCHHHHHHHHHHHHEECCCCCCCCE
IWINATILLLQQESERHLPGADVLYSQQCATLFTLAVRDWLSQAGTAKSVLNLLLHPRLG
EEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHH
RVILHMLETPAHPWTVETLAQRVHMSRASFAQLFRDVSATTPLAVLTTLRLQIAAQTLSR
HHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
EVLPVMVIAESVGYASESSFHKAFVREFGCTPGEYRKRVSALGR
HHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MDALSRLLTLNAPQGSIDKNCPLGGDWQLPHAAGELSVIRWHTVTQGEAQLEMPTGDAMT
CCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEECCCCCEEE
LTPGKVVILPQNSAHRLRQSGESPTHIVCGSLRLHTTSRYFLTALPEVLCLAPPPHSPAS
ECCCEEEEECCCHHHHHHHCCCCCCEEEECCEEEECCHHHHHHHHHHHHEECCCCCCCCE
IWINATILLLQQESERHLPGADVLYSQQCATLFTLAVRDWLSQAGTAKSVLNLLLHPRLG
EEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHH
RVILHMLETPAHPWTVETLAQRVHMSRASFAQLFRDVSATTPLAVLTTLRLQIAAQTLSR
HHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
EVLPVMVIAESVGYASESSFHKAFVREFGCTPGEYRKRVSALGR
HHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]