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The map label for this gene is fimY

Identifier: 16763930

GI number: 16763930

Start: 611492

End: 612214

Strand: Reverse

Name: fimY

Synonym: STM0550

Alternate gene names: 16763930

Gene position: 612214-611492 (Counterclockwise)

Preceding gene: 16763931

Following gene: 16763929

Centisome position: 12.6

GC content: 46.47

Gene sequence:

>723_bases
ATGCGCAGCGTACCACGCAGGGAAAGACACCGCCGTTTAAGAAATGCTAAAGACTGCGCCTGCCGTTATCACTCTCCAAC
GCCGCAGATATTTGATCGCCTTGAGTTACTGAACCAACAGCTCAATTATGCCTTGCCGGTTGGTATCATTTCTCAGGCAA
TAATTACAACTGACAACTACCTCGGCTATTCATTGAGTCACTACTTATTTTCCGGAAAACGTACCGCAGCATTCCGCTCA
TTAGATGACATTTCTTTGTGGATTGAAAAGGGGTCGCTCAGACAACTGATTGTAGATATGGAGGCGCTACCTGTCTCCTG
TATTGAGGCGCTTAACCAGCTACGCGCGCTCAGTTGGCAACAAAGCGATATCCAGATTTACCTGCTGGTATCAGATAAAA
CCTCCGCTATAACACAGTTTATCCGTATGGCTGGGCGTTTTTTTGTCCTGTCGCGACGACAAAATCTGGCCTCAGTACGC
GAAGCCTTGTTATCAGCCTCCAAACCTCGCTTATCGGAAAGCTTTAGCCGTACTGACTGGTTGATGATTGAAACTTTAGC
GCAAGGCGCCTCTTTAAAAGAAATAGCACGTCAGCAAAGCGTACCTTATCATCGTGTAGTTTACCGGCTTAAACAACTTA
TCACCCTCCTTAACCTTCCCCACAGGCAAAGCTTTCTTCGGCTGATCCAGCAGCTAAACGTTACTTTCCACGACATTTTT
TAA

Upstream 100 bases:

>100_bases
GCAACGAAGCATTGCTTTTTACGCTGGTGCAACGATGGAACAAGGTTATTTATGGCCAGCCATATTACCAGATATATATT
AGAGCAATGGAAAAAGCAGG

Downstream 100 bases:

>100_bases
CGAAGTAACGTTTTGGTGAATAAGATTTTTTAAGAAATTACTTATTTTCACTTCCATTAAATGTAAATATTTCACATAAA
ATTAATATTTACAACTCGTC

Product: regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MRSVPRRERHRRLRNAKDCACRYHSPTPQIFDRLELLNQQLNYALPVGIISQAIITTDNYLGYSLSHYLFSGKRTAAFRS
LDDISLWIEKGSLRQLIVDMEALPVSCIEALNQLRALSWQQSDIQIYLLVSDKTSAITQFIRMAGRFFVLSRRQNLASVR
EALLSASKPRLSESFSRTDWLMIETLAQGASLKEIARQQSVPYHRVVYRLKQLITLLNLPHRQSFLRLIQQLNVTFHDIF

Sequences:

>Translated_240_residues
MRSVPRRERHRRLRNAKDCACRYHSPTPQIFDRLELLNQQLNYALPVGIISQAIITTDNYLGYSLSHYLFSGKRTAAFRS
LDDISLWIEKGSLRQLIVDMEALPVSCIEALNQLRALSWQQSDIQIYLLVSDKTSAITQFIRMAGRFFVLSRRQNLASVR
EALLSASKPRLSESFSRTDWLMIETLAQGASLKEIARQQSVPYHRVVYRLKQLITLLNLPHRQSFLRLIQQLNVTFHDIF
>Mature_240_residues
MRSVPRRERHRRLRNAKDCACRYHSPTPQIFDRLELLNQQLNYALPVGIISQAIITTDNYLGYSLSHYLFSGKRTAAFRS
LDDISLWIEKGSLRQLIVDMEALPVSCIEALNQLRALSWQQSDIQIYLLVSDKTSAITQFIRMAGRFFVLSRRQNLASVR
EALLSASKPRLSESFSRTDWLMIETLAQGASLKEIARQQSVPYHRVVYRLKQLITLLNLPHRQSFLRLIQQLNVTFHDIF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Fimbrium (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): FIMY_SALTY (P26318)

Other databases:

- EMBL:   M90677
- EMBL:   L19338
- EMBL:   AE006468
- PIR:   A45273
- RefSeq:   NP_459545.1
- GeneID:   1252070
- GenomeReviews:   AE006468_GR
- KEGG:   stm:STM0550
- NMPDR:   fig|99287.1.peg.535
- HOGENOM:   HBG416520
- OMA:   TDNYLGY
- ProtClustDB:   CLSK893976
- BioCyc:   STYP99287:STM0550-MONOMER
- GO:   GO:0009289
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27862; Mature: 27862

Theoretical pI: Translated: 10.59; Mature: 10.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSVPRRERHRRLRNAKDCACRYHSPTPQIFDRLELLNQQLNYALPVGIISQAIITTDNY
CCCCCHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCC
LGYSLSHYLFSGKRTAAFRSLDDISLWIEKGSLRQLIVDMEALPVSCIEALNQLRALSWQ
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
QSDIQIYLLVSDKTSAITQFIRMAGRFFVLSRRQNLASVREALLSASKPRLSESFSRTDW
CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
LMIETLAQGASLKEIARQQSVPYHRVVYRLKQLITLLNLPHRQSFLRLIQQLNVTFHDIF
HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHCC
>Mature Secondary Structure
MRSVPRRERHRRLRNAKDCACRYHSPTPQIFDRLELLNQQLNYALPVGIISQAIITTDNY
CCCCCHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCC
LGYSLSHYLFSGKRTAAFRSLDDISLWIEKGSLRQLIVDMEALPVSCIEALNQLRALSWQ
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
QSDIQIYLLVSDKTSAITQFIRMAGRFFVLSRRQNLASVREALLSASKPRLSESFSRTDW
CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
LMIETLAQGASLKEIARQQSVPYHRVVYRLKQLITLLNLPHRQSFLRLIQQLNVTFHDIF
HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1360005; 11677609