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The map label for this gene is fimZ

Identifier: 16763929

GI number: 16763929

Start: 610256

End: 610888

Strand: Reverse

Name: fimZ

Synonym: STM0549

Alternate gene names: 16763929

Gene position: 610888-610256 (Counterclockwise)

Preceding gene: 16763930

Following gene: 16763922

Centisome position: 12.58

GC content: 41.07

Gene sequence:

>633_bases
ATGAAACCTGCATCTGTTATCATTATGGACGAACACCCTATTGTAAGAATGTCGATCGAAGTTTTACTCGGTAAAAATAG
CAATATTCAGGTTGTCCTGAAAACGGATGATAGCCGAACAGCGATAGAGTATCTGCGCACTTATCCTGTTGACCTTGTCA
TTCTGGATATTGAATTACCGGGCACCGACGGCTTTACCTTACTTAAACGAATCAAATCTATCCAGGAACATACCCGGATA
CTTTTTTTATCGTCGAAATCAGAGGCTTTTTATGCCGGAAGAGCAATAAGAGCGGGCGCAAACGGATTTGTAAGTAAACG
CAAAGACCTCAATGATATTTATAATGCGGTAAAAATGATTTTATCCGGCTATTCTTTTTTCCCATCTGAGACGCTTAATT
TCATCAGTAATACCCGTACCCCCAAAGGCGGGCACCATGATATGCCACTATCTAACCGCGAAGTTACCGTGCTGCGCTAT
CTGGCCAATGGAATGTCTAACAAAGAAATTGCCGAGCAACTTTTATTGAGTAACAAGACTATCAGCGCGCATAAGGCCAA
TATATTTTCTAAACTTGGCCTTCACTCTATCGTTGAGCTTATCGATTACGCCAAATCACACGAATTATTGTAA

Upstream 100 bases:

>100_bases
CTCCACTGTGTGGTGTGTAGATCTGGCTATTTCACAATCTTTAAGGTGTCTGACGCTTATTATAAAACGAAGGACGCATA
ACAGTCTGAGGCATACAACA

Downstream 100 bases:

>100_bases
ATGTACTCCCGGCGAATTATCGTTCGGGAGCCACAATAACGGACACTAATTGTAATTGATCAGGAAGGTCGCATCCGCGT
TAGCAAGTCCGGGCTGCACG

Product: transcriptional regulator FimZ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 210

Protein sequence:

>210_residues
MKPASVIIMDEHPIVRMSIEVLLGKNSNIQVVLKTDDSRTAIEYLRTYPVDLVILDIELPGTDGFTLLKRIKSIQEHTRI
LFLSSKSEAFYAGRAIRAGANGFVSKRKDLNDIYNAVKMILSGYSFFPSETLNFISNTRTPKGGHHDMPLSNREVTVLRY
LANGMSNKEIAEQLLLSNKTISAHKANIFSKLGLHSIVELIDYAKSHELL

Sequences:

>Translated_210_residues
MKPASVIIMDEHPIVRMSIEVLLGKNSNIQVVLKTDDSRTAIEYLRTYPVDLVILDIELPGTDGFTLLKRIKSIQEHTRI
LFLSSKSEAFYAGRAIRAGANGFVSKRKDLNDIYNAVKMILSGYSFFPSETLNFISNTRTPKGGHHDMPLSNREVTVLRY
LANGMSNKEIAEQLLLSNKTISAHKANIFSKLGLHSIVELIDYAKSHELL
>Mature_210_residues
MKPASVIIMDEHPIVRMSIEVLLGKNSNIQVVLKTDDSRTAIEYLRTYPVDLVILDIELPGTDGFTLLKRIKSIQEHTRI
LFLSSKSEAFYAGRAIRAGANGFVSKRKDLNDIYNAVKMILSGYSFFPSETLNFISNTRTPKGGHHDMPLSNREVTVLRY
LANGMSNKEIAEQLLLSNKTISAHKANIFSKLGLHSIVELIDYAKSHELL

Specific function: Unknown

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm (Probable)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain

Homologues:

Organism=Escherichia coli, GI1786747, Length=210, Percent_Identity=71.9047619047619, Blast_Score=317, Evalue=3e-88,
Organism=Escherichia coli, GI1788712, Length=205, Percent_Identity=33.6585365853659, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1788222, Length=208, Percent_Identity=29.3269230769231, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1790102, Length=197, Percent_Identity=34.5177664974619, Blast_Score=101, Evalue=3e-23,
Organism=Escherichia coli, GI1788521, Length=200, Percent_Identity=31.5, Blast_Score=90, Evalue=9e-20,
Organism=Escherichia coli, GI1788546, Length=212, Percent_Identity=31.1320754716981, Blast_Score=81, Evalue=4e-17,
Organism=Escherichia coli, GI1787473, Length=189, Percent_Identity=25.9259259259259, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): FIMZ_SALTY (P26319)

Other databases:

- EMBL:   M90677
- EMBL:   L19338
- EMBL:   AE006468
- PIR:   B45273
- RefSeq:   NP_459544.1
- ProteinModelPortal:   P26319
- SMR:   P26319
- PRIDE:   P26319
- GeneID:   1252069
- GenomeReviews:   AE006468_GR
- KEGG:   stm:STM0549
- HOGENOM:   HBG753323
- OMA:   SKSESFY
- ProtClustDB:   PRK09935
- BioCyc:   STYP99287:STM0549-MONOMER
- GO:   GO:0005737
- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PRINTS:   PR00038
- SMART:   SM00421
- SMART:   SM00448

Pfam domain/function: PF00196 GerE; PF00072 Response_reg; SSF52172 CheY_like

EC number: NA

Molecular weight: Translated: 23547; Mature: 23547

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: PS00622 HTH_LUXR_1; PS50043 HTH_LUXR_2; PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPASVIIMDEHPIVRMSIEVLLGKNSNIQVVLKTDDSRTAIEYLRTYPVDLVILDIELP
CCCCEEEEECCCCEEEEEEEEEECCCCCEEEEEEECCCHHHHHHHHHCCEEEEEEEEEEC
GTDGFTLLKRIKSIQEHTRILFLSSKSEAFYAGRAIRAGANGFVSKRKDLNDIYNAVKMI
CCCCHHHHHHHHHHHHHCEEEEEECCCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHH
LSGYSFFPSETLNFISNTRTPKGGHHDMPLSNREVTVLRYLANGMSNKEIAEQLLLSNKT
HCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCC
ISAHKANIFSKLGLHSIVELIDYAKSHELL
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKPASVIIMDEHPIVRMSIEVLLGKNSNIQVVLKTDDSRTAIEYLRTYPVDLVILDIELP
CCCCEEEEECCCCEEEEEEEEEECCCCCEEEEEEECCCHHHHHHHHHCCEEEEEEEEEEC
GTDGFTLLKRIKSIQEHTRILFLSSKSEAFYAGRAIRAGANGFVSKRKDLNDIYNAVKMI
CCCCHHHHHHHHHHHHHCEEEEEECCCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHH
LSGYSFFPSETLNFISNTRTPKGGHHDMPLSNREVTVLRYLANGMSNKEIAEQLLLSNKT
HCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCC
ISAHKANIFSKLGLHSIVELIDYAKSHELL
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1360005; 11677609