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The map label for this gene is ybbB [H]

Identifier: 16763893

GI number: 16763893

Start: 573686

End: 574780

Strand: Reverse

Name: ybbB [H]

Synonym: STM0513

Alternate gene names: 16763893

Gene position: 574780-573686 (Counterclockwise)

Preceding gene: 16763894

Following gene: 16763886

Centisome position: 11.83

GC content: 55.98

Gene sequence:

>1095_bases
ATGCAAGACAGACAAAAAGCACAGGACTATCGCGCGCTCCTCCTTGCCGATACGCCTTTAATTGATGTACGCGCGCCGAT
TGAGTTTGAACAGGGCGCCATGCCGGGCGCTATCAACCTGCCATTGATGATGGATGACGAGCGAGCCGCCGTCGGCACCT
GCTACAAACGTCAGGGCGCGGATGCGGCGTTAGCGCTGGGGCATCGGCTGGTTTGCGGCGACATTCGCCAGCAGCGGCTT
GAGGCCTGGAAAGCCGCGTATCAACGTTTCCCCAACGGGTATCTGTGCTGCGCGCGCGGCGGTCAGCGGTCACATATCGT
ACAACGTTGGCTGCAAGAAACAGGGATTGACTGCCCGCTTATTGAAGGCGGCTATAAAGCGCTGCGCCAGACAGCAATTC
AGGCGACCTGGCAACTGGCGCAAAAACCGATACTTTTAATTGGCGGCTGTACGGGCAGCGGCAAAACGCAACTGGTACGA
CAACAGCCCAACGGCGTGGATCTGGAAGGTCTCGCGCGTCATCGCGGCTCCTCTTTTGGCCGCACGCTGAACCCCCAGCT
CAGCCAGGCCAGTTTTGAAAACAAACTTGCCGTTGAATTGCTGAAAATTAACGCGCGTCAGACGCTAAAAAGGTGGGTAC
TGGAAGATGAAGGGCGAACGATCGGCGCCAACCATCTGCCTGAGTGTTTACGCGAAAGAATGGCGCAGGCCCCCATTGCG
GTAGTGGAAGATCCGTTTGCGCTTCGTCTGGAACGACTGCGTGAAGAGTATTTCATCCGTATGCATCACGACTTCACCCA
CGCCTACGGCGATGAAGCCGGTTGGCAGGCGTATAGTGAATATCTTCATCATGGACTGTTCGCTATTCGCCGCCGTCTGG
GGTTGCAACGCTTTGCCGAACTGACGGACACGCTGGATAGGGCGCTGGCAGAGCAATTATCCAGCGGCAGCACTGACGGC
CATATGGCATGGCTGGTTCCGCTACTTAACGAATATTACGACCCAATGTATCGCTATCAACTGGAGAAAAAAGCCGCGAA
TATCGTTTTTCGCGGCACATGGCAAGACGTTGCCAACTGGCTAAAAGCGCAATAG

Upstream 100 bases:

>100_bases
TTTATCCATTTTCAACACGGTACGCTGTTAAAAATCAAGCCACTTTGCGAATTGGCGCGTAAAATAGCGCAAAGGATGAT
TTAAGGTTACGTTTTACGTT

Downstream 100 bases:

>100_bases
CTTACTTTTATTGCCGGCTGACGCTACATTGAGCCGGCTTAGTGTCTGTCGCGCTTGTCGGCACGTTTTGCCAGCCAGTC
GCCCAGCATCTGAACGACCT

Product: tRNA 2-selenouridine synthase

Products: NA

Alternate protein names: Selenophosphate-dependent tRNA 2-selenouridine synthase [H]

Number of amino acids: Translated: 364; Mature: 364

Protein sequence:

>364_residues
MQDRQKAQDYRALLLADTPLIDVRAPIEFEQGAMPGAINLPLMMDDERAAVGTCYKRQGADAALALGHRLVCGDIRQQRL
EAWKAAYQRFPNGYLCCARGGQRSHIVQRWLQETGIDCPLIEGGYKALRQTAIQATWQLAQKPILLIGGCTGSGKTQLVR
QQPNGVDLEGLARHRGSSFGRTLNPQLSQASFENKLAVELLKINARQTLKRWVLEDEGRTIGANHLPECLRERMAQAPIA
VVEDPFALRLERLREEYFIRMHHDFTHAYGDEAGWQAYSEYLHHGLFAIRRRLGLQRFAELTDTLDRALAEQLSSGSTDG
HMAWLVPLLNEYYDPMYRYQLEKKAANIVFRGTWQDVANWLKAQ

Sequences:

>Translated_364_residues
MQDRQKAQDYRALLLADTPLIDVRAPIEFEQGAMPGAINLPLMMDDERAAVGTCYKRQGADAALALGHRLVCGDIRQQRL
EAWKAAYQRFPNGYLCCARGGQRSHIVQRWLQETGIDCPLIEGGYKALRQTAIQATWQLAQKPILLIGGCTGSGKTQLVR
QQPNGVDLEGLARHRGSSFGRTLNPQLSQASFENKLAVELLKINARQTLKRWVLEDEGRTIGANHLPECLRERMAQAPIA
VVEDPFALRLERLREEYFIRMHHDFTHAYGDEAGWQAYSEYLHHGLFAIRRRLGLQRFAELTDTLDRALAEQLSSGSTDG
HMAWLVPLLNEYYDPMYRYQLEKKAANIVFRGTWQDVANWLKAQ
>Mature_364_residues
MQDRQKAQDYRALLLADTPLIDVRAPIEFEQGAMPGAINLPLMMDDERAAVGTCYKRQGADAALALGHRLVCGDIRQQRL
EAWKAAYQRFPNGYLCCARGGQRSHIVQRWLQETGIDCPLIEGGYKALRQTAIQATWQLAQKPILLIGGCTGSGKTQLVR
QQPNGVDLEGLARHRGSSFGRTLNPQLSQASFENKLAVELLKINARQTLKRWVLEDEGRTIGANHLPECLRERMAQAPIA
VVEDPFALRLERLREEYFIRMHHDFTHAYGDEAGWQAYSEYLHHGLFAIRRRLGLQRFAELTDTLDRALAEQLSSGSTDG
HMAWLVPLLNEYYDPMYRYQLEKKAANIVFRGTWQDVANWLKAQ

Specific function: Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA [H]

COG id: COG2603

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 rhodanese domain [H]

Homologues:

Organism=Escherichia coli, GI1786712, Length=364, Percent_Identity=78.021978021978, Blast_Score=597, Evalue=1e-172,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001763
- InterPro:   IPR017582 [H]

Pfam domain/function: PF00581 Rhodanese [H]

EC number: NA

Molecular weight: Translated: 41329; Mature: 41329

Theoretical pI: Translated: 8.28; Mature: 8.28

Prosite motif: PS50206 RHODANESE_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDRQKAQDYRALLLADTPLIDVRAPIEFEQGAMPGAINLPLMMDDERAAVGTCYKRQGA
CCCHHHHHHHHEEEEECCCEEEEECCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHCCC
DAALALGHRLVCGDIRQQRLEAWKAAYQRFPNGYLCCARGGQRSHIVQRWLQETGIDCPL
CHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCE
IEGGYKALRQTAIQATWQLAQKPILLIGGCTGSGKTQLVRQQPNGVDLEGLARHRGSSFG
EHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHCCCCCCCCHHHHHHHCCCCCC
RTLNPQLSQASFENKLAVELLKINARQTLKRWVLEDEGRTIGANHLPECLRERMAQAPIA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHCCEE
VVEDPFALRLERLREEYFIRMHHDFTHAYGDEAGWQAYSEYLHHGLFAIRRRLGLQRFAE
EECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTDTLDRALAEQLSSGSTDGHMAWLVPLLNEYYDPMYRYQLEKKAANIVFRGTWQDVANW
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHCCEEEECCHHHHHHH
LKAQ
HCCC
>Mature Secondary Structure
MQDRQKAQDYRALLLADTPLIDVRAPIEFEQGAMPGAINLPLMMDDERAAVGTCYKRQGA
CCCHHHHHHHHEEEEECCCEEEEECCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHCCC
DAALALGHRLVCGDIRQQRLEAWKAAYQRFPNGYLCCARGGQRSHIVQRWLQETGIDCPL
CHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCE
IEGGYKALRQTAIQATWQLAQKPILLIGGCTGSGKTQLVRQQPNGVDLEGLARHRGSSFG
EHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHCCCCCCCCHHHHHHHCCCCCC
RTLNPQLSQASFENKLAVELLKINARQTLKRWVLEDEGRTIGANHLPECLRERMAQAPIA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHCCEE
VVEDPFALRLERLREEYFIRMHHDFTHAYGDEAGWQAYSEYLHHGLFAIRRRLGLQRFAE
EECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTDTLDRALAEQLSSGSTDGHMAWLVPLLNEYYDPMYRYQLEKKAANIVFRGTWQDVANW
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHCCEEEECCHHHHHHH
LKAQ
HCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA