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The map label for this gene is ybbS [H]

Identifier: 16763894

GI number: 16763894

Start: 574850

End: 575776

Strand: Reverse

Name: ybbS [H]

Synonym: STM0514

Alternate gene names: 16763894

Gene position: 575776-574850 (Counterclockwise)

Preceding gene: 16763906

Following gene: 16763893

Centisome position: 11.85

GC content: 53.51

Gene sequence:

>927_bases
ATGTTTGACCCGGAAACACTGCGTACCTTTATCAGCGTTGCCGAAACGGGGAGTTTCTCCAAAGCGGCGGAGCGCCTGTG
TAAAACCACGGCAACCATTAGCTACCGCATCAAACTGCTGGAGGAAAATACCGGCGTAGGGCTGTTCTTTCGCACAACGC
GAAGCGTCTCGTTGACGGCGGCGGGCTCTCACCTTCTCTCTCAGGCAAAAGACTGGCTTGCGTGGCTGGACAGCATGCCT
GACGAGCTACGCCAGGTTAACGACGGCGTAGAGCGTCAGGTCAATATTGTGGTGAATAACCTGCTCTATAGCCCGCAAGC
GGTCGCCAGTCTCTTATCGTGGCTTAATGCGCGTTACCCTTTCACCCAGTTTCACTTTTCCCGGCAAATTTATATGGGCG
TCTGGGATTCGCTCCTGTATGAAGGTTTTTCGCTGGCGATTGGCGTAACTGGCACCGAGCCGTTGGCTAATACCTTTATG
CTCGACCCTTTAGGTTCCGTACAATGGCGTTTTGTGATGTCCGCGGATCATCCTTTAGCTCACGTCAGCGGGCCTCTAAC
AGAAGCGCAGTTGCGCCGTTTCCCGGCAATTAATATCGAAGACAGCGCGCGTACGCTGACCAAGCGGGTAGCCTGGCGCC
TTCCGGGGCAGAAGGAAATTATCGTGCCTGATATGGAAACCAAAATCGCCGCTCATCTGGCAGGCGTCGGTATCGGTTTT
GTCCCGCAGCCGCTTTGTCAAACGCTGATCGACAAAAACGAACTGGTGAGCTGTACCATCCCGACGATGCGTCCGCCCTC
ACCGTTAAGCCTCGCCTGGCATAAATTTGGCGGAGGCAAAGCGGTAGAAGACATTGTGAAATTATTTACCCAACGGCAAC
CCGAAATAGCCGGTTTTTTATCCATTTTCAACACGGTACGCTGTTAA

Upstream 100 bases:

>100_bases
GATTTAGACCACAAATCAAACATGGCTATTATGTAAAACTACTTAAAAATCATAGGAAAACAATTCTGGTTTTATCAGGA
TCGTAAGGAGGCGTCTGACG

Downstream 100 bases:

>100_bases
AAATCAAGCCACTTTGCGAATTGGCGCGTAAAATAGCGCAAAGGATGATTTAAGGTTACGTTTTACGTTATGCAAGACAG
ACAAAAAGCACAGGACTATC

Product: DNA-binding transcriptional activator AllS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MFDPETLRTFISVAETGSFSKAAERLCKTTATISYRIKLLEENTGVGLFFRTTRSVSLTAAGSHLLSQAKDWLAWLDSMP
DELRQVNDGVERQVNIVVNNLLYSPQAVASLLSWLNARYPFTQFHFSRQIYMGVWDSLLYEGFSLAIGVTGTEPLANTFM
LDPLGSVQWRFVMSADHPLAHVSGPLTEAQLRRFPAINIEDSARTLTKRVAWRLPGQKEIIVPDMETKIAAHLAGVGIGF
VPQPLCQTLIDKNELVSCTIPTMRPPSPLSLAWHKFGGGKAVEDIVKLFTQRQPEIAGFLSIFNTVRC

Sequences:

>Translated_308_residues
MFDPETLRTFISVAETGSFSKAAERLCKTTATISYRIKLLEENTGVGLFFRTTRSVSLTAAGSHLLSQAKDWLAWLDSMP
DELRQVNDGVERQVNIVVNNLLYSPQAVASLLSWLNARYPFTQFHFSRQIYMGVWDSLLYEGFSLAIGVTGTEPLANTFM
LDPLGSVQWRFVMSADHPLAHVSGPLTEAQLRRFPAINIEDSARTLTKRVAWRLPGQKEIIVPDMETKIAAHLAGVGIGF
VPQPLCQTLIDKNELVSCTIPTMRPPSPLSLAWHKFGGGKAVEDIVKLFTQRQPEIAGFLSIFNTVRC
>Mature_308_residues
MFDPETLRTFISVAETGSFSKAAERLCKTTATISYRIKLLEENTGVGLFFRTTRSVSLTAAGSHLLSQAKDWLAWLDSMP
DELRQVNDGVERQVNIVVNNLLYSPQAVASLLSWLNARYPFTQFHFSRQIYMGVWDSLLYEGFSLAIGVTGTEPLANTFM
LDPLGSVQWRFVMSADHPLAHVSGPLTEAQLRRFPAINIEDSARTLTKRVAWRLPGQKEIIVPDMETKIAAHLAGVGIGF
VPQPLCQTLIDKNELVSCTIPTMRPPSPLSLAWHKFGGGKAVEDIVKLFTQRQPEIAGFLSIFNTVRC

Specific function: Positive regulator essential for the expression of allD operon. Binds to the allD promoter [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786713, Length=308, Percent_Identity=86.3636363636364, Blast_Score=558, Evalue=1e-160,
Organism=Escherichia coli, GI1786508, Length=289, Percent_Identity=37.3702422145329, Blast_Score=202, Evalue=2e-53,
Organism=Escherichia coli, GI1787949, Length=275, Percent_Identity=30.5454545454545, Blast_Score=152, Evalue=4e-38,
Organism=Escherichia coli, GI87082024, Length=277, Percent_Identity=24.187725631769, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1789492, Length=289, Percent_Identity=25.9515570934256, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI145693105, Length=247, Percent_Identity=27.9352226720648, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787879, Length=189, Percent_Identity=28.5714285714286, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788748, Length=123, Percent_Identity=30.8943089430894, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34271; Mature: 34271

Theoretical pI: Translated: 7.99; Mature: 7.99

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDPETLRTFISVAETGSFSKAAERLCKTTATISYRIKLLEENTGVGLFFRTTRSVSLTA
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHEEEEEEEEEECCCCEEEEEEECCCEEEEH
AGSHLLSQAKDWLAWLDSMPDELRQVNDGVERQVNIVVNNLLYSPQAVASLLSWLNARYP
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC
FTQFHFSRQIYMGVWDSLLYEGFSLAIGVTGTEPLANTFMLDPLGSVQWRFVMSADHPLA
HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHEEECCCCCCEEEEEEECCCCHH
HVSGPLTEAQLRRFPAINIEDSARTLTKRVAWRLPGQKEIIVPDMETKIAAHLAGVGIGF
HCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHCCCCC
VPQPLCQTLIDKNELVSCTIPTMRPPSPLSLAWHKFGGGKAVEDIVKLFTQRQPEIAGFL
CCHHHHHHHCCCCCEEEEECCCCCCCCCCEEHHECCCCCHHHHHHHHHHHCCCCHHHHHH
SIFNTVRC
HHHHHHCC
>Mature Secondary Structure
MFDPETLRTFISVAETGSFSKAAERLCKTTATISYRIKLLEENTGVGLFFRTTRSVSLTA
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHEEEEEEEEEECCCCEEEEEEECCCEEEEH
AGSHLLSQAKDWLAWLDSMPDELRQVNDGVERQVNIVVNNLLYSPQAVASLLSWLNARYP
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC
FTQFHFSRQIYMGVWDSLLYEGFSLAIGVTGTEPLANTFMLDPLGSVQWRFVMSADHPLA
HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHEEECCCCCCEEEEEEECCCCHH
HVSGPLTEAQLRRFPAINIEDSARTLTKRVAWRLPGQKEIIVPDMETKIAAHLAGVGIGF
HCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHCCCCC
VPQPLCQTLIDKNELVSCTIPTMRPPSPLSLAWHKFGGGKAVEDIVKLFTQRQPEIAGFL
CCHHHHHHHCCCCCEEEEECCCCCCCCCCEEHHECCCCCHHHHHHHHHHHCCCCHHHHHH
SIFNTVRC
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA