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The map label for this gene is ybaV [H]

Identifier: 16763834

GI number: 16763834

Start: 510688

End: 511062

Strand: Direct

Name: ybaV [H]

Synonym: STM0453

Alternate gene names: 16763834

Gene position: 510688-511062 (Clockwise)

Preceding gene: 16763833

Following gene: 16763835

Centisome position: 10.51

GC content: 52.53

Gene sequence:

>375_bases
ATGAAACACGGAATTAAAGCACTGCTTATTACGCTTTCTTTAACCTGCGCGGGCATGGCCCATAGCGCGCTGGCGGCGAC
GCCTGTCGCAAAAAATGCAGCGGTGGAAACAAAAGCGGATACGCCTTCTTCATCCTCCGCCAAAGCGGCATTACCTGCTA
AAGCCAGCGATGATGAAGGTACCAGGGTGAGCATTAATACCGCGTCTGCGGAGGATCTGGCGCGGGTGATGAACGGCGTT
GGGCTGAAAAAAGCGCAGGCTATTGTGAGCTATCGGGAGGAGTATGGTCCTTTTAAAACGGTGGATGATTTAAAGCAGGT
GCCGGGAATGGGAAGCGCGCTGGTGGAGCGTAATCTGGCAGTTTTAACATTGTAA

Upstream 100 bases:

>100_bases
CCGCTTTCGCGGCCTTTTCCATTTCTGAGAATTGCCGTTTGTTCGTTTTTCTCCGCCCCGCTATCGTGGCTGCACTGTTA
ACAAACAAGGAGAAAACAGT

Downstream 100 bases:

>100_bases
TCACTTGCACAGTGGCCAAAATTTGCCAGACTGTAGAGGTCATACCAGTTATGACCTCTGTACTTGTCGTTTACTTATAA
CAACAACGTAAGGTTATTGC

Product: DNA uptake protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 124; Mature: 124

Protein sequence:

>124_residues
MKHGIKALLITLSLTCAGMAHSALAATPVAKNAAVETKADTPSSSSAKAALPAKASDDEGTRVSINTASAEDLARVMNGV
GLKKAQAIVSYREEYGPFKTVDDLKQVPGMGSALVERNLAVLTL

Sequences:

>Translated_124_residues
MKHGIKALLITLSLTCAGMAHSALAATPVAKNAAVETKADTPSSSSAKAALPAKASDDEGTRVSINTASAEDLARVMNGV
GLKKAQAIVSYREEYGPFKTVDDLKQVPGMGSALVERNLAVLTL
>Mature_124_residues
MKHGIKALLITLSLTCAGMAHSALAATPVAKNAAVETKADTPSSSSAKAALPAKASDDEGTRVSINTASAEDLARVMNGV
GLKKAQAIVSYREEYGPFKTVDDLKQVPGMGSALVERNLAVLTL

Specific function: Unknown

COG id: COG1555

COG function: function code L; DNA uptake protein and related DNA-binding proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HhH domains [H]

Homologues:

Organism=Escherichia coli, GI1786646, Length=124, Percent_Identity=83.8709677419355, Blast_Score=208, Evalue=7e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004509
- InterPro:   IPR003583 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12767; Mature: 12767

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHGIKALLITLSLTCAGMAHSALAATPVAKNAAVETKADTPSSSSAKAALPAKASDDEG
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TRVSINTASAEDLARVMNGVGLKKAQAIVSYREEYGPFKTVDDLKQVPGMGSALVERNLA
CEEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHCCEE
VLTL
EEEC
>Mature Secondary Structure
MKHGIKALLITLSLTCAGMAHSALAATPVAKNAAVETKADTPSSSSAKAALPAKASDDEG
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TRVSINTASAEDLARVMNGVGLKKAQAIVSYREEYGPFKTVDDLKQVPGMGSALVERNLA
CEEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHCCEE
VLTL
EEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]