| Definition | Yersinia pestis CO92 chromosome, complete genome. |
|---|---|
| Accession | NC_003143 |
| Length | 4,653,728 |
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The map label for this gene is 284987067
Identifier: 284987067
GI number: 284987067
Start: 1053699
End: 1054799
Strand: Direct
Name: 284987067
Synonym: YPO0955
Alternate gene names: NA
Gene position: 1053699-1054799 (Clockwise)
Preceding gene: 218928125
Following gene: 218928127
Centisome position: 22.64
GC content: 54.31
Gene sequence:
>1101_bases ATGCGTCTGTTGTTACTTATTTTCCTGCTCTGCACTTGGGCAGTTAGCGCCAAAACGATTACCGATATTACCGGCCAACG CATCGAAATTCCGGATAACCCACAGCGTATCGTATTAGGTGAAAGCCGCATGCTATATACCCTCGCGTTGCTGGAACCGG GCTACCCCGCCGCTCGCGTGGTGGGCTGGCCGTTGGACCTGAAGAAATACGATCCGCAAAGCTGGGCGCTATATACCGAT AAGTTTCCGCAGATGACCCACATTCCGGCTCTGGGCAGCACGGGTCTGCGCGATATCAACCCGGAGAAGGTGCTGGAGTT GGCACCAGATCTGGTTATCCTGCCAGTACTCGCTAAAACCACTCATGAAGAAATCGCGCTAATTTCCCTGCTCAAGCAAG CGCATATCCCGGTGATCCGCGTCGATTTACGCGTCGATCTGCTCAATCACACCATTCCCAGCCTACGCCTGCTCGGCGAA GCACTGAACCGCCAAGATCGCGCCGAAGCCTTTATTTCTCTGTATCAGTCCCATATGGATCGCATCCACCAGCGCATCGC CGCTTATCAGGGGCCGCACCCTAGCGTGTTGCTGCAATTGCATCTGGGGCGCGGTGACGAATGCTGCACCACCACGCTAA AGGGCAATCTCGGCCAACTGCTGGAGTTTGCCGGTGGTAACAACATCGCTGCCGCACAAGTGAAAGGGGTATTCGGCCAG CTTAGCGAAGAGTATGTGCTGGCCCGTTCACCAGAGATTTATATTGCTACCGGCATGGCAACGGCTGGCAGCCAAGCCAA AACGCTGGCGCTCGGCCCACAGGTCAGCACCGCGCAAGCGCAGGAGAGTTTCCGTCGCGTTATCGCCACGCAAAGCAAAT TGCAGCACCTTCCTGCGATTCAAAATGGTCACGCTTGGGGGTTGTGGCACAACTTCTATTTAAGCCCGCTGCATGTAGTG GCGGCGGAGTTTTTCGCTAAAACGCTTTATCCACACCTGTTTGCCGACGTTTCACCACAGGATACGCTGCAAACTATTTA CCAGCAGTTTTTGCCGCTGGATTTCACAGGAACTTTCTGGAGCCATTTGGATAATGAATAA
Upstream 100 bases:
>100_bases GGCCATCTTACCTTTCAACACATTTTTTTTGAATATCTCAAATTGATGTTACAAACGATTTTGATTATCATTCGCCCTCT TTTTTTAGCCAGTGATAATT
Downstream 100 bases:
>100_bases AATAAACATGTTCATGCTATCCACGTTCATGCGATCCATGTTCATGCGATCTACGTTGATACCCTCTACGTTCATACTGT CCACACTACTGCTGCCGGCT
Product: hypothetical protein
Products: NA
Alternate protein names: Ferrichrome/Ferrioxamine B Periplasmic Transporter; Iron Transporter; Ferrisiderophore Receptor Irp6A; Fe3+-Hydroxamate ABC Transporter Periplasmic Protein; Copper Amine Oxidase Domain Protein; Copper Amine Oxidase Domain-Containing Protein; Iron(III) ABC Transporter
Number of amino acids: Translated: 366; Mature: 366
Protein sequence:
>366_residues MRLLLLIFLLCTWAVSAKTITDITGQRIEIPDNPQRIVLGESRMLYTLALLEPGYPAARVVGWPLDLKKYDPQSWALYTD KFPQMTHIPALGSTGLRDINPEKVLELAPDLVILPVLAKTTHEEIALISLLKQAHIPVIRVDLRVDLLNHTIPSLRLLGE ALNRQDRAEAFISLYQSHMDRIHQRIAAYQGPHPSVLLQLHLGRGDECCTTTLKGNLGQLLEFAGGNNIAAAQVKGVFGQ LSEEYVLARSPEIYIATGMATAGSQAKTLALGPQVSTAQAQESFRRVIATQSKLQHLPAIQNGHAWGLWHNFYLSPLHVV AAEFFAKTLYPHLFADVSPQDTLQTIYQQFLPLDFTGTFWSHLDNE
Sequences:
>Translated_366_residues MRLLLLIFLLCTWAVSAKTITDITGQRIEIPDNPQRIVLGESRMLYTLALLEPGYPAARVVGWPLDLKKYDPQSWALYTD KFPQMTHIPALGSTGLRDINPEKVLELAPDLVILPVLAKTTHEEIALISLLKQAHIPVIRVDLRVDLLNHTIPSLRLLGE ALNRQDRAEAFISLYQSHMDRIHQRIAAYQGPHPSVLLQLHLGRGDECCTTTLKGNLGQLLEFAGGNNIAAAQVKGVFGQ LSEEYVLARSPEIYIATGMATAGSQAKTLALGPQVSTAQAQESFRRVIATQSKLQHLPAIQNGHAWGLWHNFYLSPLHVV AAEFFAKTLYPHLFADVSPQDTLQTIYQQFLPLDFTGTFWSHLDNE >Mature_366_residues MRLLLLIFLLCTWAVSAKTITDITGQRIEIPDNPQRIVLGESRMLYTLALLEPGYPAARVVGWPLDLKKYDPQSWALYTD KFPQMTHIPALGSTGLRDINPEKVLELAPDLVILPVLAKTTHEEIALISLLKQAHIPVIRVDLRVDLLNHTIPSLRLLGE ALNRQDRAEAFISLYQSHMDRIHQRIAAYQGPHPSVLLQLHLGRGDECCTTTLKGNLGQLLEFAGGNNIAAAQVKGVFGQ LSEEYVLARSPEIYIATGMATAGSQAKTLALGPQVSTAQAQESFRRVIATQSKLQHLPAIQNGHAWGLWHNFYLSPLHVV AAEFFAKTLYPHLFADVSPQDTLQTIYQQFLPLDFTGTFWSHLDNE
Specific function: Unknown
COG id: COG0614
COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40759; Mature: 40759
Theoretical pI: Translated: 6.89; Mature: 6.89
Prosite motif: PS50983 FE_B12_PBP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLLLLIFLLCTWAVSAKTITDITGQRIEIPDNPQRIVLGESRMLYTLALLEPGYPAARV CHHHHHHHHHHHHHCCCHHHHHCCCCEEECCCCCCEEEEECCCEEEEEEEECCCCCHHHE VGWPLDLKKYDPQSWALYTDKFPQMTHIPALGSTGLRDINPEKVLELAPDLVILPVLAKT EECCCCCCCCCCCCEEEEECCCCCCEECCCCCCCCCCCCCHHHHHHHCCCEEEEHHHHHC THEEIALISLLKQAHIPVIRVDLRVDLLNHTIPSLRLLGEALNRQDRAEAFISLYQSHMD CHHHHHHHHHHHHHCCCEEEEEEEHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHH RIHQRIAAYQGPHPSVLLQLHLGRGDECCTTTLKGNLGQLLEFAGGNNIAAAQVKGVFGQ HHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHCCCHHHHHHHCCCCCEEHHHHHHHHHH LSEEYVLARSPEIYIATGMATAGSQAKTLALGPQVSTAQAQESFRRVIATQSKLQHLPAI CCCCEEEECCCCEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCC QNGHAWGLWHNFYLSPLHVVAAEFFAKTLYPHLFADVSPQDTLQTIYQQFLPLDFTGTFW CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHH SHLDNE HHCCCC >Mature Secondary Structure MRLLLLIFLLCTWAVSAKTITDITGQRIEIPDNPQRIVLGESRMLYTLALLEPGYPAARV CHHHHHHHHHHHHHCCCHHHHHCCCCEEECCCCCCEEEEECCCEEEEEEEECCCCCHHHE VGWPLDLKKYDPQSWALYTDKFPQMTHIPALGSTGLRDINPEKVLELAPDLVILPVLAKT EECCCCCCCCCCCCEEEEECCCCCCEECCCCCCCCCCCCCHHHHHHHCCCEEEEHHHHHC THEEIALISLLKQAHIPVIRVDLRVDLLNHTIPSLRLLGEALNRQDRAEAFISLYQSHMD CHHHHHHHHHHHHHCCCEEEEEEEHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHH RIHQRIAAYQGPHPSVLLQLHLGRGDECCTTTLKGNLGQLLEFAGGNNIAAAQVKGVFGQ HHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHCCCHHHHHHHCCCCCEEHHHHHHHHHH LSEEYVLARSPEIYIATGMATAGSQAKTLALGPQVSTAQAQESFRRVIATQSKLQHLPAI CCCCEEEECCCCEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCC QNGHAWGLWHNFYLSPLHVVAAEFFAKTLYPHLFADVSPQDTLQTIYQQFLPLDFTGTFW CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHH SHLDNE HHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA