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The map label for this gene is yhjD [H]

Identifier: 218930980

GI number: 218930980

Start: 4489448

End: 4490530

Strand: Direct

Name: yhjD [H]

Synonym: YPO3985

Alternate gene names: 218930980

Gene position: 4489448-4490530 (Clockwise)

Preceding gene: 218930975

Following gene: 218930981

Centisome position: 96.47

GC content: 47.37

Gene sequence:

>1083_bases
ATGCCGAACGCACCGAAAGATAAAGTCACACCACAGGTATGCAGTCAATCCACAGCCCCACTGGCTGTCGGGATTAAAAC
CGGCAAAAAAGCCATCTCTCATATGGCCTGCCTCAGTGATCGCATTAGAGCCTATCCCGCTATCGCCCATATTATTCGTG
CAACAGATCGTTTTAATGACCGGTTAGGGAGCCAATTCGGTGCCGCTATTACTTACTTTTCATTTTTGTCACTGATCCCC
ATTTTGATGGTCTCTTTTGTTATGGTCGGTTTTGTATTAGCGTCAAATCCCGATCTGTTGGCTGAATTAATTAACAAAAT
TGTGAATAGCATCAGTGACCCGGCACTGGCCACCACACTCAAAAATACGGTGAATACCGCCATCCAGCAACGCACCACCG
TTGGGCTGACCGGCTTAGCCATTGCGCTTTATTCCGGGATCAGTTGGATAGGGAACCTGCGCGAAGCGATTCGGGCGCAA
TCACGTGATGTCTGGGAACGTAATCCGCAAGATAAGGAAAAATTCTATTACCGCTATGCCCGGGATTTTATCTCACTGAT
TGGGTTAGTGGTGGCGTTGATTATCACACTCTCACTGACCTCCATTGCCGGTGCTGCCCAAGCGGCGATCGTCAATGCGT
TAGGCCTGGGGAGTATTGAATGGTTACGCCCAGCCATGACGTTAATCGCGCTATCAATTTCTATTGCCGCTAACTACCTG
TTATTTTTATGGATATTCTGGATATTACCGCGAAATAAGCCGAAGAAAAAAGCGCTGTTACGCGGAGCCCTCATTGCCGC
CATCGGTTTTGAAGTAATTAAATTTATCATGACCATGATGCTGCCGCGCCTCGCCAGTTCACCGTCTGGCGCAGCCTTTG
GCTCGGTGATTGGTTTAATGGCTTTCTTCTACTTTTTTGCCCGCCTAACCTTATTCTGTGCGGCTTGGATAGCCACTGCC
CATGATGTAGCGGACAACCGTGTTGAGAGCAAAGACATTATTGAGGATAAAGACATTGAGGATAAGAATATTGAGGACCA
AAACGTAGAAGACAAGAGTTTACCAACACGTGGAGAAAAGTAA

Upstream 100 bases:

>100_bases
GTCCGACTCTGCTATTATCAGCAAGCCATAAGTATTTTATGTCATATTTTGTAGAATAATCATCTACATAAGGCATAGGT
TAAGGCCATCGAGGAAAAAT

Downstream 100 bases:

>100_bases
CTTATGATTATGAAAAAATCATCAGTGTCACGCTCAATAAAATGGCGTAGATACTTACTGACATTGCTGATCTTGATCAT
ACTGGCTGCAGGCCTGATTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 360; Mature: 359

Protein sequence:

>360_residues
MPNAPKDKVTPQVCSQSTAPLAVGIKTGKKAISHMACLSDRIRAYPAIAHIIRATDRFNDRLGSQFGAAITYFSFLSLIP
ILMVSFVMVGFVLASNPDLLAELINKIVNSISDPALATTLKNTVNTAIQQRTTVGLTGLAIALYSGISWIGNLREAIRAQ
SRDVWERNPQDKEKFYYRYARDFISLIGLVVALIITLSLTSIAGAAQAAIVNALGLGSIEWLRPAMTLIALSISIAANYL
LFLWIFWILPRNKPKKKALLRGALIAAIGFEVIKFIMTMMLPRLASSPSGAAFGSVIGLMAFFYFFARLTLFCAAWIATA
HDVADNRVESKDIIEDKDIEDKNIEDQNVEDKSLPTRGEK

Sequences:

>Translated_360_residues
MPNAPKDKVTPQVCSQSTAPLAVGIKTGKKAISHMACLSDRIRAYPAIAHIIRATDRFNDRLGSQFGAAITYFSFLSLIP
ILMVSFVMVGFVLASNPDLLAELINKIVNSISDPALATTLKNTVNTAIQQRTTVGLTGLAIALYSGISWIGNLREAIRAQ
SRDVWERNPQDKEKFYYRYARDFISLIGLVVALIITLSLTSIAGAAQAAIVNALGLGSIEWLRPAMTLIALSISIAANYL
LFLWIFWILPRNKPKKKALLRGALIAAIGFEVIKFIMTMMLPRLASSPSGAAFGSVIGLMAFFYFFARLTLFCAAWIATA
HDVADNRVESKDIIEDKDIEDKNIEDQNVEDKSLPTRGEK
>Mature_359_residues
PNAPKDKVTPQVCSQSTAPLAVGIKTGKKAISHMACLSDRIRAYPAIAHIIRATDRFNDRLGSQFGAAITYFSFLSLIPI
LMVSFVMVGFVLASNPDLLAELINKIVNSISDPALATTLKNTVNTAIQQRTTVGLTGLAIALYSGISWIGNLREAIRAQS
RDVWERNPQDKEKFYYRYARDFISLIGLVVALIITLSLTSIAGAAQAAIVNALGLGSIEWLRPAMTLIALSISIAANYLL
FLWIFWILPRNKPKKKALLRGALIAAIGFEVIKFIMTMMLPRLASSPSGAAFGSVIGLMAFFYFFARLTLFCAAWIATAH
DVADNRVESKDIIEDKDIEDKNIEDQNVEDKSLPTRGEK

Specific function: Unknown

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789939, Length=302, Percent_Identity=69.8675496688742, Blast_Score=444, Evalue=1e-126,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005274
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: NA

Molecular weight: Translated: 39471; Mature: 39340

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNAPKDKVTPQVCSQSTAPLAVGIKTGKKAISHMACLSDRIRAYPAIAHIIRATDRFND
CCCCCCCCCCHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLGSQFGAAITYFSFLSLIPILMVSFVMVGFVLASNPDLLAELINKIVNSISDPALATTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHH
KNTVNTAIQQRTTVGLTGLAIALYSGISWIGNLREAIRAQSRDVWERNPQDKEKFYYRYA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
RDFISLIGLVVALIITLSLTSIAGAAQAAIVNALGLGSIEWLRPAMTLIALSISIAANYL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
LFLWIFWILPRNKPKKKALLRGALIAAIGFEVIKFIMTMMLPRLASSPSGAAFGSVIGLM
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
AFFYFFARLTLFCAAWIATAHDVADNRVESKDIIEDKDIEDKNIEDQNVEDKSLPTRGEK
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PNAPKDKVTPQVCSQSTAPLAVGIKTGKKAISHMACLSDRIRAYPAIAHIIRATDRFND
CCCCCCCCCHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLGSQFGAAITYFSFLSLIPILMVSFVMVGFVLASNPDLLAELINKIVNSISDPALATTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHH
KNTVNTAIQQRTTVGLTGLAIALYSGISWIGNLREAIRAQSRDVWERNPQDKEKFYYRYA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
RDFISLIGLVVALIITLSLTSIAGAAQAAIVNALGLGSIEWLRPAMTLIALSISIAANYL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
LFLWIFWILPRNKPKKKALLRGALIAAIGFEVIKFIMTMMLPRLASSPSGAAFGSVIGLM
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
AFFYFFARLTLFCAAWIATAHDVADNRVESKDIIEDKDIEDKNIEDQNVEDKSLPTRGEK
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]