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The map label for this gene is rbsC [H]

Identifier: 218930959

GI number: 218930959

Start: 4459871

End: 4460863

Strand: Reverse

Name: rbsC [H]

Synonym: YPO3963

Alternate gene names: 218930959

Gene position: 4460863-4459871 (Counterclockwise)

Preceding gene: 218930960

Following gene: 218930958

Centisome position: 95.86

GC content: 53.17

Gene sequence:

>993_bases
ATGACTAACTCAGGCACGCCGCAGCAGGTGGCAAAATCGGCCTCGCTGAAAAAAGCGTTTTTTAGCGATTTACTGCAAAC
CGTGGGTATTTTACCGATTCTGGTGTTGATTGTGGCGGTATTCGGGTTTCTCGCCCCAAATTTCTTTACCGAATCTAACC
TACTCAATATCGCCCGGCAGTCATCCATAAATATCGTCCTCGCGGCGGGAATGACCTTCATTATTCTGACCGGAGGTATC
GACCTTTCCGTGGGGTCAATTCTCGGGACTACGGCAGTTACCGCCATGGCAGTTTCGCTGATGCCCGGCTGGGAAGGTCT
TTCTATTCCGGCGGCGCTATTAATGGGTACCGGTCTTGGGCTGTTTAACGGCATGTTGGTGGCATGGGCTGGACTGCCGC
CATTTATTGTTACCCTCGGCACATACACGGCGCTGCGCGGTGTGGCCTACTTACTGGCTGATGGCACCACTATTATCAAC
TCGAACATTAATTTTGAGTGGATAGGCAATGCTTATCTCGGCCCGGTCCCGTGGCTGGTGGTTATCGCCCTACTGGTGGT
TGCCGTGTGCTGGTTTATTTTACGCCGCACTACCCTTGGCGTTCACATATATGCGGTGGGCGGCAATATGCAGGCGGCGC
GCTTGACCGGCATTAAAGTGTGGATGGTGCTGCTGTTTGTCTATGGCATGAGCGGGTTGCTGTCCGGACTCGGCGGCGTC
ATGAGTGCATCGCGACTTTACAGCGCTAACGGCAATCTTGGTATGGGCTATGAATTGGACGCCATCGCGGCGGTTATCCT
CGGGGGGACCAGTTTTGTTGGTGGAGTAGGCACCATCACAGGCACGCTGGTTGGTGCTCTGATTATCGCCACCCTCAATA
ACGGCATGACGCTAATGGGGGTCTCTTATTTCTGGCAATTGGTGATCAAAGGGGCGGTGATCATCATAGCGGTGCTGATA
GACAAATACCGTACCCGTCACCATAACTCATAA

Upstream 100 bases:

>100_bases
GGACGTATTGCAGGGGAACTACATCACCCTGATATCACGCAGGAAAATATTATGACGCTGGCAACTGGCGTGACCGAGGA
CCATAAAAAAGAGGTTTACC

Downstream 100 bases:

>100_bases
CTAAAAATACCCTTACACAGGAGTAACAGCATGCGTTTGAAACCCATAATGACCGCACTAATCGCGGGGGCCATGATAGC
CAGTTCACCGGCGCTCCAGG

Product: sugar transport system permease

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 329

Protein sequence:

>330_residues
MTNSGTPQQVAKSASLKKAFFSDLLQTVGILPILVLIVAVFGFLAPNFFTESNLLNIARQSSINIVLAAGMTFIILTGGI
DLSVGSILGTTAVTAMAVSLMPGWEGLSIPAALLMGTGLGLFNGMLVAWAGLPPFIVTLGTYTALRGVAYLLADGTTIIN
SNINFEWIGNAYLGPVPWLVVIALLVVAVCWFILRRTTLGVHIYAVGGNMQAARLTGIKVWMVLLFVYGMSGLLSGLGGV
MSASRLYSANGNLGMGYELDAIAAVILGGTSFVGGVGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAVLI
DKYRTRHHNS

Sequences:

>Translated_330_residues
MTNSGTPQQVAKSASLKKAFFSDLLQTVGILPILVLIVAVFGFLAPNFFTESNLLNIARQSSINIVLAAGMTFIILTGGI
DLSVGSILGTTAVTAMAVSLMPGWEGLSIPAALLMGTGLGLFNGMLVAWAGLPPFIVTLGTYTALRGVAYLLADGTTIIN
SNINFEWIGNAYLGPVPWLVVIALLVVAVCWFILRRTTLGVHIYAVGGNMQAARLTGIKVWMVLLFVYGMSGLLSGLGGV
MSASRLYSANGNLGMGYELDAIAAVILGGTSFVGGVGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAVLI
DKYRTRHHNS
>Mature_329_residues
TNSGTPQQVAKSASLKKAFFSDLLQTVGILPILVLIVAVFGFLAPNFFTESNLLNIARQSSINIVLAAGMTFIILTGGID
LSVGSILGTTAVTAMAVSLMPGWEGLSIPAALLMGTGLGLFNGMLVAWAGLPPFIVTLGTYTALRGVAYLLADGTTIINS
NINFEWIGNAYLGPVPWLVVIALLVVAVCWFILRRTTLGVHIYAVGGNMQAARLTGIKVWMVLLFVYGMSGLLSGLGGVM
SASRLYSANGNLGMGYELDAIAAVILGGTSFVGGVGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAVLID
KYRTRHHNS

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4158

COG function: function code R; Predicted ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=323, Percent_Identity=43.0340557275542, Blast_Score=208, Evalue=3e-55,
Organism=Escherichia coli, GI1790524, Length=328, Percent_Identity=39.9390243902439, Blast_Score=194, Evalue=5e-51,
Organism=Escherichia coli, GI1788896, Length=342, Percent_Identity=35.0877192982456, Blast_Score=181, Evalue=6e-47,
Organism=Escherichia coli, GI145693152, Length=324, Percent_Identity=33.9506172839506, Blast_Score=154, Evalue=7e-39,
Organism=Escherichia coli, GI1789992, Length=343, Percent_Identity=33.8192419825073, Blast_Score=153, Evalue=1e-38,
Organism=Escherichia coli, GI1788471, Length=337, Percent_Identity=36.7952522255193, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI145693214, Length=251, Percent_Identity=38.2470119521912, Blast_Score=131, Evalue=7e-32,
Organism=Escherichia coli, GI87082395, Length=307, Percent_Identity=34.2019543973941, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1787793, Length=292, Percent_Identity=32.8767123287671, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1787794, Length=315, Percent_Identity=29.2063492063492, Blast_Score=93, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34547; Mature: 34415

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNSGTPQQVAKSASLKKAFFSDLLQTVGILPILVLIVAVFGFLAPNFFTESNLLNIARQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
SSINIVLAAGMTFIILTGGIDLSVGSILGTTAVTAMAVSLMPGWEGLSIPAALLMGTGLG
CCCCEEEECCCEEEEEECCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHH
LFNGMLVAWAGLPPFIVTLGTYTALRGVAYLLADGTTIINSNINFEWIGNAYLGPVPWLV
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEECCCCCCCHHHHHH
VIALLVVAVCWFILRRTTLGVHIYAVGGNMQAARLTGIKVWMVLLFVYGMSGLLSGLGGV
HHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MSASRLYSANGNLGMGYELDAIAAVILGGTSFVGGVGTITGTLVGALIIATLNNGMTLMG
HHHHHHEECCCCCCCCCCHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHCCCCHHHH
VSYFWQLVIKGAVIIIAVLIDKYRTRHHNS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TNSGTPQQVAKSASLKKAFFSDLLQTVGILPILVLIVAVFGFLAPNFFTESNLLNIARQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
SSINIVLAAGMTFIILTGGIDLSVGSILGTTAVTAMAVSLMPGWEGLSIPAALLMGTGLG
CCCCEEEECCCEEEEEECCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHH
LFNGMLVAWAGLPPFIVTLGTYTALRGVAYLLADGTTIINSNINFEWIGNAYLGPVPWLV
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEECCCCCCCHHHHHH
VIALLVVAVCWFILRRTTLGVHIYAVGGNMQAARLTGIKVWMVLLFVYGMSGLLSGLGGV
HHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MSASRLYSANGNLGMGYELDAIAAVILGGTSFVGGVGTITGTLVGALIIATLNNGMTLMG
HHHHHHEECCCCCCCCCCHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHCCCCHHHH
VSYFWQLVIKGAVIIIAVLIDKYRTRHHNS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]