Click here to switch to the map view.

The map label for this gene is fimB [H]

Identifier: 218930882

GI number: 218930882

Start: 4357952

End: 4358698

Strand: Direct

Name: fimB [H]

Synonym: YPO3881

Alternate gene names: 218930882

Gene position: 4357952-4358698 (Clockwise)

Preceding gene: 218930881

Following gene: 218930883

Centisome position: 93.64

GC content: 48.19

Gene sequence:

>747_bases
TTGCTGCTACTCATGACCACCTGTCGTGTACTGACTCTCCCTGCGCTGACGATTGGCGTGCTGATAATGAGTGCGCTGGC
AACGAGTGCAGTGGCAAGTGTGATTGCAGAGAGAACACGTATTGTCTTCAGTGAAGGCAGTACAGAAGAGTCACTGCAAC
TGGTGAACAGCAATAGCTATCCGGTAGCGGTACAAGTTTGGGTGGATGACGGCAATTTGATGGCGACGCCTGATAAGGCT
GTTTCACCCATATTGGTGTTACCTCCGGTATTCCGGTTACAACCTCAGGCACAGCGTAGCCTGCGGTTGATCTTATCTGG
TGGGAGTAAATTACCTGCGGATAGGGAATCTGCATTCTGGCTAAATATTTACGAAATCCCGCCTAAGGCAACCCCCAAAT
CCGGTGATGAATCTTTTGTTACGCTGGCCCTACGGATGCAATATAAAGTCTTTTACCGCCCTAAAAACCTACCCGCGCCA
GGAGATATTTTAGGCAAGGCATTAACCTTTAGCCTCGAGCGTAACGGCGACAGTGCGCTGATTAAGGTTAACAATCCAAC
CCCTTACTATGCATCCTTCGCTGCTTTGACCATCGGTTCAGCCGAAGGCCCTCCGGAAATGGTGGCCCCGTTCTCTCAAT
TAGATTTTCCACTAAACCGAGCGCCAATTAGCGACAACAAAACCGTCAATTTTGATTTAATTGATGATTTAGGCAACCGA
AACTCTTTTAGCCATGAGTTGAAATAA

Upstream 100 bases:

>100_bases
GGGCAAACAGTGACCGCCGGAGCAGTGAATGCACATGCGCAAGTGGTTATCCGTGTCCAATAATATAATGCTTAGCCGTA
TCAACCGTAGGCTCCGTGGG

Downstream 100 bases:

>100_bases
AGTGCGCTGCTGGGAATGGCAGTTTGGGGGCGAGTAGTGCACAGACACTGGAAGCTTATTACGGTTTGAATATAACTCAT
AATTTCTCTCCTTGTTATAT

Product: putative chaperone protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MLLLMTTCRVLTLPALTIGVLIMSALATSAVASVIAERTRIVFSEGSTEESLQLVNSNSYPVAVQVWVDDGNLMATPDKA
VSPILVLPPVFRLQPQAQRSLRLILSGGSKLPADRESAFWLNIYEIPPKATPKSGDESFVTLALRMQYKVFYRPKNLPAP
GDILGKALTFSLERNGDSALIKVNNPTPYYASFAALTIGSAEGPPEMVAPFSQLDFPLNRAPISDNKTVNFDLIDDLGNR
NSFSHELK

Sequences:

>Translated_248_residues
MLLLMTTCRVLTLPALTIGVLIMSALATSAVASVIAERTRIVFSEGSTEESLQLVNSNSYPVAVQVWVDDGNLMATPDKA
VSPILVLPPVFRLQPQAQRSLRLILSGGSKLPADRESAFWLNIYEIPPKATPKSGDESFVTLALRMQYKVFYRPKNLPAP
GDILGKALTFSLERNGDSALIKVNNPTPYYASFAALTIGSAEGPPEMVAPFSQLDFPLNRAPISDNKTVNFDLIDDLGNR
NSFSHELK
>Mature_248_residues
MLLLMTTCRVLTLPALTIGVLIMSALATSAVASVIAERTRIVFSEGSTEESLQLVNSNSYPVAVQVWVDDGNLMATPDKA
VSPILVLPPVFRLQPQAQRSLRLILSGGSKLPADRESAFWLNIYEIPPKATPKSGDESFVTLALRMQYKVFYRPKNLPAP
GDILGKALTFSLERNGDSALIKVNNPTPYYASFAALTIGSAEGPPEMVAPFSQLDFPLNRAPISDNKTVNFDLIDDLGNR
NSFSHELK

Specific function: Required for the biogenesis of the filamentous hemagglutinin and the fimbria [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1786333, Length=220, Percent_Identity=32.2727272727273, Blast_Score=121, Evalue=5e-29,
Organism=Escherichia coli, GI87082203, Length=238, Percent_Identity=28.5714285714286, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1789532, Length=227, Percent_Identity=29.0748898678414, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1787171, Length=238, Percent_Identity=30.2521008403361, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1786936, Length=201, Percent_Identity=30.3482587064677, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1790771, Length=227, Percent_Identity=28.1938325991189, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1788677, Length=159, Percent_Identity=35.8490566037736, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1786743, Length=239, Percent_Identity=29.2887029288703, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1788428, Length=223, Percent_Identity=26.0089686098655, Blast_Score=82, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 27007; Mature: 27007

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLLMTTCRVLTLPALTIGVLIMSALATSAVASVIAERTRIVFSEGSTEESLQLVNSNSY
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHEEECCCCC
PVAVQVWVDDGNLMATPDKAVSPILVLPPVFRLQPQAQRSLRLILSGGSKLPADRESAFW
CEEEEEEEECCCEEECCHHHCCCEEECCCCHHCCCHHHHCEEEEEECCCCCCCCCCCEEE
LNIYEIPPKATPKSGDESFVTLALRMQYKVFYRPKNLPAPGDILGKALTFSLERNGDSAL
EEEEECCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCHHHHCCEEEEEEECCCCEEE
IKVNNPTPYYASFAALTIGSAEGPPEMVAPFSQLDFPLNRAPISDNKTVNFDLIDDLGNR
EEECCCCCCEEEEEEEEECCCCCCHHHHCCHHHCCCCCCCCCCCCCCEEEEEECCCCCCC
NSFSHELK
CCCCCCCC
>Mature Secondary Structure
MLLLMTTCRVLTLPALTIGVLIMSALATSAVASVIAERTRIVFSEGSTEESLQLVNSNSY
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHEEECCCCC
PVAVQVWVDDGNLMATPDKAVSPILVLPPVFRLQPQAQRSLRLILSGGSKLPADRESAFW
CEEEEEEEECCCEEECCHHHCCCEEECCCCHHCCCHHHHCEEEEEECCCCCCCCCCCEEE
LNIYEIPPKATPKSGDESFVTLALRMQYKVFYRPKNLPAPGDILGKALTFSLERNGDSAL
EEEEECCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCHHHHCCEEEEEEECCCCEEE
IKVNNPTPYYASFAALTIGSAEGPPEMVAPFSQLDFPLNRAPISDNKTVNFDLIDDLGNR
EEECCCCCCEEEEEEEEECCCCCCHHHHCCHHHCCCCCCCCCCCCCCEEEEEECCCCCCC
NSFSHELK
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1360139; 1354611; 12910271 [H]