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The map label for this gene is rumC

Identifier: 218930784

GI number: 218930784

Start: 4244312

End: 4245745

Strand: Reverse

Name: rumC

Synonym: YPO3782

Alternate gene names: 218930784

Gene position: 4245745-4244312 (Counterclockwise)

Preceding gene: 218930785

Following gene: 218930783

Centisome position: 91.23

GC content: 46.51

Gene sequence:

>1434_bases
TTGTCCCAGCAGCGAACAAAAGCACAGCAAGATATTGAACGGCGATTACTGGAGCAGGCATTACAGCAGGCACAACAGAG
TATTGCTACATTGCAGATGACTCAACAACGTAATGAGCAACAGTTACGGCAAAGTGAGTTGGAACAACGTAATTTGCATA
GCCAATTAGCGGCAAATAGCGAAAAATTACAGCAGCTTGCTCATTGGCGTAATGAATGTGAACAGCTTAATCAAGAATTG
CGGGCTCAAAGGGAAATCAATAGTGCCCAAGAAGCAGAATTACGTGAAGTCACCATCCGCTTAGAAGAAACTCGCTTAGC
CACAGAAGAAAAGCAGCGTTTATTACTTAATAGTGAACAGCGACTGACCACTCAGTTTGAGAATTTGGCAAACCGCATCT
TTGAGCAAACGGGGCGTCGGGCTGATGAACAGAATAAGCAAAGCTTAGATCGCCTGCTATTACCTTTACGTGAACAGCTT
GATGGCTTTCGTCGTCAGGTTCAGGATAGCTTTGGGCAAGAAGCTCGGGAGCGTCATACTCTGACTCACGAAATTCGGAA
CCTGCAACAATTGAATGCCCAGATGGCGCGAGAGGCATTGAATCTGACCAAGGCTTTGAAAGGGGATAATAAAACACAGG
GTAACTGGGGGGAAGTCGTTCTGGCCAAAGTGCTTGAAGCCTCAGGGTTACGTGAGGGGCATGAATATCAAACACAGGTT
AGCGTTAAAATTGACCAAACCAGTCGTATGCAGCCGGATGTGATTGTTCGATTACCCCAAGGCAAAGATGTCGTTATTGA
CGCTAAAATGTCATTGGTTGCCTATGAACGTTATTTTAATAGCGAAGATGATGCTGAACGTGAGGTTGCGTTGAATGAAC
ATTTATCATCATTACGTGGCCATATCAGGATGCTGGGGCGTAAAGATTACCAGCAACTCCCCGGTTTACGCTCCCTCGAT
TATGTGTTGATGTTTATCCCGGTAGAACCTGCATTTTTGGTGGCTATTGACCGCCAGCCTGAGTTGATCAACGAAGCACT
ACAACACAATATCATGTTGGTCAGCCCTACCACATTACTAGTGGCTTTGCGCACTATCACCAATTTGTGGCGCTACGAGC
ATCAAAGCCAAAATGCGCAACGTATTGCTGAAAGAGCCGCCAGACTTTATGACAAAGTACGCTTGTTTGTTGATGATATG
GCGTCTTTGGGGCAAAGCCTCGATAAAGCACAGCTAAGCTATCACCAGGCAATGAATAAACTGTCCCAGGGCCGTGGTAA
CCTAGTTGGGCAAGTAGAGAGTTTTCGCACTCTAGGGGTCGAGGTAAAGCGGCCTATTAGCCCATTACTGGCAGAAAAAG
CCTGCGCGGAGCATCAACCTGAGGGTGATTTAGCGCTATCCGATGACGCAGAATCAGGGGCATTTCCAGAGTAA

Upstream 100 bases:

>100_bases
CTGACATTAGAGGAGCAGGGGGATAATCGTGGATATCAGTTTATTTTATGGGCTGGGTGGCTGTTTGGTCGGGGGGCTGA
TCGGGTGGCTAATTGCCAGT

Downstream 100 bases:

>100_bases
TTTAATTGGCACCGCAACCAGGGGGTGTGGGGCTTTCATCGGAGTTCTGGTACACTTCCTCGAAAGATTGACTGAAAAGC
AGGCATAGAAAATGGTAGAT

Product: putative DNA recombination protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 477; Mature: 476

Protein sequence:

>477_residues
MSQQRTKAQQDIERRLLEQALQQAQQSIATLQMTQQRNEQQLRQSELEQRNLHSQLAANSEKLQQLAHWRNECEQLNQEL
RAQREINSAQEAELREVTIRLEETRLATEEKQRLLLNSEQRLTTQFENLANRIFEQTGRRADEQNKQSLDRLLLPLREQL
DGFRRQVQDSFGQEARERHTLTHEIRNLQQLNAQMAREALNLTKALKGDNKTQGNWGEVVLAKVLEASGLREGHEYQTQV
SVKIDQTSRMQPDVIVRLPQGKDVVIDAKMSLVAYERYFNSEDDAEREVALNEHLSSLRGHIRMLGRKDYQQLPGLRSLD
YVLMFIPVEPAFLVAIDRQPELINEALQHNIMLVSPTTLLVALRTITNLWRYEHQSQNAQRIAERAARLYDKVRLFVDDM
ASLGQSLDKAQLSYHQAMNKLSQGRGNLVGQVESFRTLGVEVKRPISPLLAEKACAEHQPEGDLALSDDAESGAFPE

Sequences:

>Translated_477_residues
MSQQRTKAQQDIERRLLEQALQQAQQSIATLQMTQQRNEQQLRQSELEQRNLHSQLAANSEKLQQLAHWRNECEQLNQEL
RAQREINSAQEAELREVTIRLEETRLATEEKQRLLLNSEQRLTTQFENLANRIFEQTGRRADEQNKQSLDRLLLPLREQL
DGFRRQVQDSFGQEARERHTLTHEIRNLQQLNAQMAREALNLTKALKGDNKTQGNWGEVVLAKVLEASGLREGHEYQTQV
SVKIDQTSRMQPDVIVRLPQGKDVVIDAKMSLVAYERYFNSEDDAEREVALNEHLSSLRGHIRMLGRKDYQQLPGLRSLD
YVLMFIPVEPAFLVAIDRQPELINEALQHNIMLVSPTTLLVALRTITNLWRYEHQSQNAQRIAERAARLYDKVRLFVDDM
ASLGQSLDKAQLSYHQAMNKLSQGRGNLVGQVESFRTLGVEVKRPISPLLAEKACAEHQPEGDLALSDDAESGAFPE
>Mature_476_residues
SQQRTKAQQDIERRLLEQALQQAQQSIATLQMTQQRNEQQLRQSELEQRNLHSQLAANSEKLQQLAHWRNECEQLNQELR
AQREINSAQEAELREVTIRLEETRLATEEKQRLLLNSEQRLTTQFENLANRIFEQTGRRADEQNKQSLDRLLLPLREQLD
GFRRQVQDSFGQEARERHTLTHEIRNLQQLNAQMAREALNLTKALKGDNKTQGNWGEVVLAKVLEASGLREGHEYQTQVS
VKIDQTSRMQPDVIVRLPQGKDVVIDAKMSLVAYERYFNSEDDAEREVALNEHLSSLRGHIRMLGRKDYQQLPGLRSLDY
VLMFIPVEPAFLVAIDRQPELINEALQHNIMLVSPTTLLVALRTITNLWRYEHQSQNAQRIAERAARLYDKVRLFVDDMA
SLGQSLDKAQLSYHQAMNKLSQGRGNLVGQVESFRTLGVEVKRPISPLLAEKACAEHQPEGDLALSDDAESGAFPE

Specific function: Involved in DNA recombination

COG id: COG1322

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rmuC family

Homologues:

Organism=Escherichia coli, GI1790266, Length=430, Percent_Identity=70.4651162790698, Blast_Score=629, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RMUC_YERPE (Q8ZAL8)

Other databases:

- EMBL:   AL590842
- EMBL:   AE009952
- EMBL:   AE017042
- PIR:   AE0460
- RefSeq:   NP_667786.1
- RefSeq:   NP_994558.1
- RefSeq:   YP_002348659.1
- ProteinModelPortal:   Q8ZAL8
- GeneID:   1145395
- GeneID:   1176616
- GeneID:   2765025
- GenomeReviews:   AE009952_GR
- GenomeReviews:   AE017042_GR
- GenomeReviews:   AL590842_GR
- KEGG:   ype:YPO3782
- KEGG:   ypk:y0448
- KEGG:   ypm:YP_3267
- HOGENOM:   HBG575414
- OMA:   RENENRN
- ProtClustDB:   CLSK889565
- BioCyc:   YPES187410:Y0448-MONOMER
- BioCyc:   YPES214092:YPO3782-MONOMER
- InterPro:   IPR003798

Pfam domain/function: PF02646 RmuC

EC number: NA

Molecular weight: Translated: 54900; Mature: 54769

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQQRTKAQQDIERRLLEQALQQAQQSIATLQMTQQRNEQQLRQSELEQRNLHSQLAANS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
EKLQQLAHWRNECEQLNQELRAQREINSAQEAELREVTIRLEETRLATEEKQRLLLNSEQ
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
RLTTQFENLANRIFEQTGRRADEQNKQSLDRLLLPLREQLDGFRRQVQDSFGQEARERHT
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTHEIRNLQQLNAQMAREALNLTKALKGDNKTQGNWGEVVLAKVLEASGLREGHEYQTQV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHEEE
SVKIDQTSRMQPDVIVRLPQGKDVVIDAKMSLVAYERYFNSEDDAEREVALNEHLSSLRG
EEEECCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
HIRMLGRKDYQQLPGLRSLDYVLMFIPVEPAFLVAIDRQPELINEALQHNIMLVSPTTLL
HHHHHCCHHHHHCCCCCCCCCEEEEEECCCEEEEEECCCHHHHHHHHHCCEEEECHHHHH
VALRTITNLWRYEHQSQNAQRIAERAARLYDKVRLFVDDMASLGQSLDKAQLSYHQAMNK
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSQGRGNLVGQVESFRTLGVEVKRPISPLLAEKACAEHQPEGDLALSDDAESGAFPE
HHCCCCCHHHHHHHHHHHCCHHHCCHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCC
>Mature Secondary Structure 
SQQRTKAQQDIERRLLEQALQQAQQSIATLQMTQQRNEQQLRQSELEQRNLHSQLAANS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
EKLQQLAHWRNECEQLNQELRAQREINSAQEAELREVTIRLEETRLATEEKQRLLLNSEQ
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
RLTTQFENLANRIFEQTGRRADEQNKQSLDRLLLPLREQLDGFRRQVQDSFGQEARERHT
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTHEIRNLQQLNAQMAREALNLTKALKGDNKTQGNWGEVVLAKVLEASGLREGHEYQTQV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHEEE
SVKIDQTSRMQPDVIVRLPQGKDVVIDAKMSLVAYERYFNSEDDAEREVALNEHLSSLRG
EEEECCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
HIRMLGRKDYQQLPGLRSLDYVLMFIPVEPAFLVAIDRQPELINEALQHNIMLVSPTTLL
HHHHHCCHHHHHCCCCCCCCCEEEEEECCCEEEEEECCCHHHHHHHHHCCEEEECHHHHH
VALRTITNLWRYEHQSQNAQRIAERAARLYDKVRLFVDDMASLGQSLDKAQLSYHQAMNK
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSQGRGNLVGQVESFRTLGVEVKRPISPLLAEKACAEHQPEGDLALSDDAESGAFPE
HHCCCCCHHHHHHHHHHHCCHHHCCHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430