| Definition | Yersinia pestis CO92 chromosome, complete genome. |
|---|---|
| Accession | NC_003143 |
| Length | 4,653,728 |
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The map label for this gene is 218930650
Identifier: 218930650
GI number: 218930650
Start: 4061409
End: 4062755
Strand: Direct
Name: 218930650
Synonym: YPO3640
Alternate gene names: NA
Gene position: 4061409-4062755 (Clockwise)
Preceding gene: 218930648
Following gene: 218930652
Centisome position: 87.27
GC content: 46.62
Gene sequence:
>1347_bases ATGCACATGAGCAAATTCCGGTTGGTGCTGCTGGCCAGTAGCATCGCATTCAGTACTTCGTCGTGGGCACAAGCCGTTGA GGTACCCGCAGTTCTGGCCGGACATGCGGTTCTGCCGGTGAAATCGACGGTTGCAACACCTTCTGATGCTCCAACTGATT TACAACAAAGCGGAAAATATACCAGCGGCCAACGCGTTAGCGCATTGGGTTCTGTGGCCGCTAAATCTGCCGACCGTCTG ACGGGCATTGGATTACCGATTAGCGGCCAACCGCTACAAGGGCACTCGGGAATAAAGCATATGCCAGATGGGACTTATTG GGTGCTAACCGATAATGGATTTGGCAGCAAAGCTAACTCACCTGATGCCATGCTTTATCTCAATCACTATAATATTGATT TCAAAAATGGCAATGTGACCCCACTGCAAACCGTGTTTCTGCACGATCCAGATAAAAAAGTGCCGTTTCATATCATTAAT GAAAGTACTGAAAAACGTTATCTGACCGGCAGTGATTTTGATCCCGAAAGCTTCCAGTTTGCCGATGATGCCCTTTGGAT TGGTGATGAATTCGGGCCTTATTTGATTAAAGCCGATTTGAACGGAAAAGTGCTGGCGGTATTTGAGACTCAGGTTGATG GCAACGTCGTGAAATCACCCGATAATCCGACGCTTACACTGCCGGGTGCTCCTGATGGTAAACAGAATTTTCAGGTAGCG CGCTCAAAAGGATTTGAAGGGATGGCGGTTTCGCCCGATGGCAGCAAGTTGTACCCCATGTTAGAAGGGGCGCTGTGGGA TGGTGAAAAATTTGAGAATATCGATGGCAAACGCTACCTGAGAGTGTTGGAGTTTGATGTTAAAAATCAGGCATGGACAG GGCGCAGTTGGCAATATGTGTTGGAAGATAACCAGAATGCCATTGGCGATTTTAATCTGATTGATGCAAACCATGGATTA GTCATTGAACGCGACAACGGCGAGGGCACGGCAGATAAAGCCTGTGCGGCAGGGGCGCCAACGGATAAGTGCTTTAGCCA GATAGCTAAGTTTAAACGTGTCTACAAAATAGCTTTCTCTGATGACAATGTCGGCAAACCAGTAGAAAAAGTGTCATATA TTGATTTGCTCAATATTAAAGACCCGCAGAACTTGGCACGTAAACCTTTAAACAACGGCGTACTGACATTCCCGTTCTTT ACCATTGAGAATGTTGATGTAGTGGATGCCAGTCATATCATTGTCGGTAACGATAATAACTTCCCATTCTCCTCCAGCCG CCAGCCTAATGAGGCGGACGATAATGAATTTATCTTACTGGATGTGAAAGCGTTATTGAGTCAGTAA
Upstream 100 bases:
>100_bases AATCATAAAGAATAACAGGGATAATATTTCTGTCACTCCGGTTCCTTATAGTGAAGTTGCTTTTTACCTTTGGGCAATAG ACATAATTAGGGAACTTAAC
Downstream 100 bases:
>100_bases CTGGCTCCATCTTTCCTGACAAGCCCGGGTATGAACTGTCCAACTTTATGGGGCCAGTCCATGCGCGGGTTTTTTACGCT TTAAGACAATATTATGTTTC
Product: hypothetical protein
Products: NA
Alternate protein names: Signal Peptide Protein; Signal Peptide; Periplasmic Protein; PEP-CTERM Exosortase Interaction Domain Protein; Glycerophosphoryl Diester Phosphodiesterase Family
Number of amino acids: Translated: 448; Mature: 448
Protein sequence:
>448_residues MHMSKFRLVLLASSIAFSTSSWAQAVEVPAVLAGHAVLPVKSTVATPSDAPTDLQQSGKYTSGQRVSALGSVAAKSADRL TGIGLPISGQPLQGHSGIKHMPDGTYWVLTDNGFGSKANSPDAMLYLNHYNIDFKNGNVTPLQTVFLHDPDKKVPFHIIN ESTEKRYLTGSDFDPESFQFADDALWIGDEFGPYLIKADLNGKVLAVFETQVDGNVVKSPDNPTLTLPGAPDGKQNFQVA RSKGFEGMAVSPDGSKLYPMLEGALWDGEKFENIDGKRYLRVLEFDVKNQAWTGRSWQYVLEDNQNAIGDFNLIDANHGL VIERDNGEGTADKACAAGAPTDKCFSQIAKFKRVYKIAFSDDNVGKPVEKVSYIDLLNIKDPQNLARKPLNNGVLTFPFF TIENVDVVDASHIIVGNDNNFPFSSSRQPNEADDNEFILLDVKALLSQ
Sequences:
>Translated_448_residues MHMSKFRLVLLASSIAFSTSSWAQAVEVPAVLAGHAVLPVKSTVATPSDAPTDLQQSGKYTSGQRVSALGSVAAKSADRL TGIGLPISGQPLQGHSGIKHMPDGTYWVLTDNGFGSKANSPDAMLYLNHYNIDFKNGNVTPLQTVFLHDPDKKVPFHIIN ESTEKRYLTGSDFDPESFQFADDALWIGDEFGPYLIKADLNGKVLAVFETQVDGNVVKSPDNPTLTLPGAPDGKQNFQVA RSKGFEGMAVSPDGSKLYPMLEGALWDGEKFENIDGKRYLRVLEFDVKNQAWTGRSWQYVLEDNQNAIGDFNLIDANHGL VIERDNGEGTADKACAAGAPTDKCFSQIAKFKRVYKIAFSDDNVGKPVEKVSYIDLLNIKDPQNLARKPLNNGVLTFPFF TIENVDVVDASHIIVGNDNNFPFSSSRQPNEADDNEFILLDVKALLSQ >Mature_448_residues MHMSKFRLVLLASSIAFSTSSWAQAVEVPAVLAGHAVLPVKSTVATPSDAPTDLQQSGKYTSGQRVSALGSVAAKSADRL TGIGLPISGQPLQGHSGIKHMPDGTYWVLTDNGFGSKANSPDAMLYLNHYNIDFKNGNVTPLQTVFLHDPDKKVPFHIIN ESTEKRYLTGSDFDPESFQFADDALWIGDEFGPYLIKADLNGKVLAVFETQVDGNVVKSPDNPTLTLPGAPDGKQNFQVA RSKGFEGMAVSPDGSKLYPMLEGALWDGEKFENIDGKRYLRVLEFDVKNQAWTGRSWQYVLEDNQNAIGDFNLIDANHGL VIERDNGEGTADKACAAGAPTDKCFSQIAKFKRVYKIAFSDDNVGKPVEKVSYIDLLNIKDPQNLARKPLNNGVLTFPFF TIENVDVVDASHIIVGNDNNFPFSSSRQPNEADDNEFILLDVKALLSQ
Specific function: Unknown
COG id: COG4222
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48949; Mature: 48949
Theoretical pI: Translated: 4.88; Mature: 4.88
Prosite motif: PS00435 PEROXIDASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHMSKFRLVLLASSIAFSTSSWAQAVEVPAVLAGHAVLPVKSTVATPSDAPTDLQQSGKY CCCHHEEEEEEEHHHHCCCCHHHHHHHCCHHHCCCEEEEEHHHCCCCCCCCCCHHHCCCC TSGQRVSALGSVAAKSADRLTGIGLPISGQPLQGHSGIKHMPDGTYWVLTDNGFGSKANS CCCCHHHHHHHHHHHCCCHHEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC PDAMLYLNHYNIDFKNGNVTPLQTVFLHDPDKKVPFHIINESTEKRYLTGSDFDPESFQF CCEEEEEEEEEEEECCCCCCEEEEEEEECCCCCCCEEEECCCCCCEEECCCCCCCCCCEE ADDALWIGDEFGPYLIKADLNGKVLAVFETQVDGNVVKSPDNPTLTLPGAPDGKQNFQVA CCCEEEECCCCCCEEEEECCCCCEEEEEEEECCCCEEECCCCCEEECCCCCCCCCCHHHH RSKGFEGMAVSPDGSKLYPMLEGALWDGEKFENIDGKRYLRVLEFDVKNQAWTGRSWQYV HHCCCCCEEECCCCCEECHHHCCEECCCCHHCCCCCHHEEEEEEEECCCCEECCCCEEEE LEDNQNAIGDFNLIDANHGLVIERDNGEGTADKACAAGAPTDKCFSQIAKFKRVYKIAFS EECCCCCCCCEEEEECCCCEEEECCCCCCCCCHHHCCCCCHHHHHHHHHHHHEEEEEEEC DDNVGKPVEKVSYIDLLNIKDPQNLARKPLNNGVLTFPFFTIENVDVVDASHIIVGNDNN CCCCCCCHHHEEEEEEECCCCHHHHHHCCCCCCEEEEEEEEECCCEEECCCEEEEECCCC FPFSSSRQPNEADDNEFILLDVKALLSQ CCCCCCCCCCCCCCCCEEEEEHHHHHCC >Mature Secondary Structure MHMSKFRLVLLASSIAFSTSSWAQAVEVPAVLAGHAVLPVKSTVATPSDAPTDLQQSGKY CCCHHEEEEEEEHHHHCCCCHHHHHHHCCHHHCCCEEEEEHHHCCCCCCCCCCHHHCCCC TSGQRVSALGSVAAKSADRLTGIGLPISGQPLQGHSGIKHMPDGTYWVLTDNGFGSKANS CCCCHHHHHHHHHHHCCCHHEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC PDAMLYLNHYNIDFKNGNVTPLQTVFLHDPDKKVPFHIINESTEKRYLTGSDFDPESFQF CCEEEEEEEEEEEECCCCCCEEEEEEEECCCCCCCEEEECCCCCCEEECCCCCCCCCCEE ADDALWIGDEFGPYLIKADLNGKVLAVFETQVDGNVVKSPDNPTLTLPGAPDGKQNFQVA CCCEEEECCCCCCEEEEECCCCCEEEEEEEECCCCEEECCCCCEEECCCCCCCCCCHHHH RSKGFEGMAVSPDGSKLYPMLEGALWDGEKFENIDGKRYLRVLEFDVKNQAWTGRSWQYV HHCCCCCEEECCCCCEECHHHCCEECCCCHHCCCCCHHEEEEEEEECCCCEECCCCEEEE LEDNQNAIGDFNLIDANHGLVIERDNGEGTADKACAAGAPTDKCFSQIAKFKRVYKIAFS EECCCCCCCCEEEEECCCCEEEECCCCCCCCCHHHCCCCCHHHHHHHHHHHHEEEEEEEC DDNVGKPVEKVSYIDLLNIKDPQNLARKPLNNGVLTFPFFTIENVDVVDASHIIVGNDNN CCCCCCCHHHEEEEEEECCCCHHHHHHCCCCCCEEEEEEEEECCCEEECCCEEEEECCCC FPFSSSRQPNEADDNEFILLDVKALLSQ CCCCCCCCCCCCCCCCEEEEEHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA