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The map label for this gene is rbsD1 [H]

Identifier: 218930630

GI number: 218930630

Start: 4038061

End: 4038564

Strand: Reverse

Name: rbsD1 [H]

Synonym: YPO3620

Alternate gene names: 218930630

Gene position: 4038564-4038061 (Counterclockwise)

Preceding gene: 218930631

Following gene: 218930628

Centisome position: 86.78

GC content: 53.17

Gene sequence:

>504_bases
ATGAGACCCGATAGAATCTTACACCCTGAACTTGCCGCCGCTTTAGCCACCTTAGGCCATACCGACATTATATTGGTCAC
GGATGCAGGCTTCCCGATCCCGCCGCAGGCTAAACGTATCGATTTGGGGTTTTGGCCTGGCACCGTTGATGTACTGCATA
TTCTGCGCGTCCTACGCAAAGAAATTTTTGTGGAAGAAGTCCGCTTTGCCAGTGAAGTCCGGGATTGTCACCCGCAACTT
TATCGTGACGTACAAACCCTCTATACCGGCTCCGGCGCTGAATTTCAGGCAGCCAGTCACGAAACGCTCTGCCACGACCT
TGCCCACCAAGCCAAAGTTGTTATCCGTTCCGGATCATTTAATCCGTGGGCCAATTTCGCGCTGGTTGCCAGTACCGATC
CTTTTGCCTGGTTCACCGATGAATCTGGCGTAAAACCGCTGCCCGCTTATGTCGCAAGACGGCAACGCATTCTCGACAAC
GTCGTACCGGAACTCAACGCCTAG

Upstream 100 bases:

>100_bases
CGTTGTGCTGTATGGATTGGGAAACGGTTCCGTCCTATCGCTACCGCGAAGATGTCGATGCTTTTATGCGATCTATAACC
GTGAAAGAGGAATAACAATA

Downstream 100 bases:

>100_bases
GGGGGATTGTTGTGAAAGCTGCGGTTGGCGGTATTGGCGCAGTTGACGATATTTATACCCAAATATTCTGTTGATAACAC
ACATACGGCTCCTACAACGG

Product: putative carbohydrate transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MRPDRILHPELAAALATLGHTDIILVTDAGFPIPPQAKRIDLGFWPGTVDVLHILRVLRKEIFVEEVRFASEVRDCHPQL
YRDVQTLYTGSGAEFQAASHETLCHDLAHQAKVVIRSGSFNPWANFALVASTDPFAWFTDESGVKPLPAYVARRQRILDN
VVPELNA

Sequences:

>Translated_167_residues
MRPDRILHPELAAALATLGHTDIILVTDAGFPIPPQAKRIDLGFWPGTVDVLHILRVLRKEIFVEEVRFASEVRDCHPQL
YRDVQTLYTGSGAEFQAASHETLCHDLAHQAKVVIRSGSFNPWANFALVASTDPFAWFTDESGVKPLPAYVARRQRILDN
VVPELNA
>Mature_167_residues
MRPDRILHPELAAALATLGHTDIILVTDAGFPIPPQAKRIDLGFWPGTVDVLHILRVLRKEIFVEEVRFASEVRDCHPQL
YRDVQTLYTGSGAEFQAASHETLCHDLAHQAKVVIRSGSFNPWANFALVASTDPFAWFTDESGVKPLPAYVARRQRILDN
VVPELNA

Specific function: Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose [H]

COG id: COG1869

COG function: function code G; ABC-type ribose transport system, auxiliary component

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbsD / fucU family. RbsD subfamily [H]

Homologues:

Organism=Escherichia coli, GI87082327, Length=136, Percent_Identity=32.3529411764706, Blast_Score=85, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023064
- InterPro:   IPR007721 [H]

Pfam domain/function: PF05025 RbsD_FucU [H]

EC number: NA

Molecular weight: Translated: 18649; Mature: 18649

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPDRILHPELAAALATLGHTDIILVTDAGFPIPPQAKRIDLGFWPGTVDVLHILRVLRK
CCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHH
EIFVEEVRFASEVRDCHPQLYRDVQTLYTGSGAEFQAASHETLCHDLAHQAKVVIRSGSF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHEEEEECCCC
NPWANFALVASTDPFAWFTDESGVKPLPAYVARRQRILDNVVPELNA
CCCCCEEEEECCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MRPDRILHPELAAALATLGHTDIILVTDAGFPIPPQAKRIDLGFWPGTVDVLHILRVLRK
CCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHH
EIFVEEVRFASEVRDCHPQLYRDVQTLYTGSGAEFQAASHETLCHDLAHQAKVVIRSGSF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHEEEEECCCC
NPWANFALVASTDPFAWFTDESGVKPLPAYVARRQRILDNVVPELNA
CCCCCEEEEECCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA