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The map label for this gene is araP [H]

Identifier: 218930485

GI number: 218930485

Start: 3876749

End: 3877633

Strand: Reverse

Name: araP [H]

Synonym: YPO3471

Alternate gene names: 218930485

Gene position: 3877633-3876749 (Counterclockwise)

Preceding gene: 218930486

Following gene: 218930484

Centisome position: 83.32

GC content: 52.09

Gene sequence:

>885_bases
ATGATAACGCTAACCCCCCGACTGAAACGTAACCTGGTTCCGTGGCTGTTCCTGGCCCCGGCACTGGTCATCTTCACCTG
GTTTAAATTCATCCCGATGTTGCAAGGGCTGGTGATGAGTTTCTACAAGGTTAACTTTAACCAGCCAAACGAGTGGGTCG
GGTTTGCCAACTTTTCCCGCGCCTTTGGTGATGAAGCGCTGCACTCGGCTGTTTTCAACACGTTGTTATATGTCCTGGTC
ACCATGGTGGTGGCCGCGTTTATCGCCTTCTTTCTGGCGATGTTATTGGAAGGGCCGGCACGGCATTTGCGTTTTATTCG
TACCGCCATCTTCCTGCCCGCAGTGACCAGTGCGGCGATTGTCGCCGAAATGTGGCGCATTCTGTTCAACCCGACCAGCA
ACGGGGTGGTGAACCACGTTTTATCGTGGTTCAGCATTGAAGCGCAGGGGTTTCTGGCGGATACCGATCAGGCGTTGTGG
ACAGTAATGCTGCTGCATATCTGGAAAGCCGTGCCTTACAACATGGTGATTTTTATCGCCGGGCTGGTAGGGATTAGCCG
TGATTTATACGACGCGTCAAACGTGGATGGGGCCAACTGGTGGAACCGCCTGCGTTATGTGACGTTACCGGGCATGATCC
CCGCGCTTTCTGTGGTCCTGATGCTGTCATTTATCCGTGGCTTCCGTGTGTTTGCCGAAGTTTACGCCACCACTGGTGGT
GGCCCGTCTAATGCGACGGAAATGATCATGACGCATATCTATAAATTGGGCTTTGAGCAGTTTGATTATGGTTATGCCTC
TGCGGTGTCTTTCCTGTTATTTGCATTCACTGTGGTGCTGACGATAGGTCATCTCACCTTGAAAAAACGGATCGCCCGTT
ACTAA

Upstream 100 bases:

>100_bases
GCCAACTGTGACAGTGATATCGCCGCAGAATTAAAAGCGGTGAATCAGAAAGTTAATGATGAGTTGGCTAAACAGAACGT
CTTAGGGCAGTGAGTGAATA

Downstream 100 bases:

>100_bases
CCGAGCCGGAGACTGGTAATGAAAAGTAAAAGCTGGAACAGTATCGGCCGTTGGATAATTTATGGTCTGCTGCTGATTGT
GTTTGTTGGCCCGTACTGGG

Product: sugar transport system, permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MITLTPRLKRNLVPWLFLAPALVIFTWFKFIPMLQGLVMSFYKVNFNQPNEWVGFANFSRAFGDEALHSAVFNTLLYVLV
TMVVAAFIAFFLAMLLEGPARHLRFIRTAIFLPAVTSAAIVAEMWRILFNPTSNGVVNHVLSWFSIEAQGFLADTDQALW
TVMLLHIWKAVPYNMVIFIAGLVGISRDLYDASNVDGANWWNRLRYVTLPGMIPALSVVLMLSFIRGFRVFAEVYATTGG
GPSNATEMIMTHIYKLGFEQFDYGYASAVSFLLFAFTVVLTIGHLTLKKRIARY

Sequences:

>Translated_294_residues
MITLTPRLKRNLVPWLFLAPALVIFTWFKFIPMLQGLVMSFYKVNFNQPNEWVGFANFSRAFGDEALHSAVFNTLLYVLV
TMVVAAFIAFFLAMLLEGPARHLRFIRTAIFLPAVTSAAIVAEMWRILFNPTSNGVVNHVLSWFSIEAQGFLADTDQALW
TVMLLHIWKAVPYNMVIFIAGLVGISRDLYDASNVDGANWWNRLRYVTLPGMIPALSVVLMLSFIRGFRVFAEVYATTGG
GPSNATEMIMTHIYKLGFEQFDYGYASAVSFLLFAFTVVLTIGHLTLKKRIARY
>Mature_294_residues
MITLTPRLKRNLVPWLFLAPALVIFTWFKFIPMLQGLVMSFYKVNFNQPNEWVGFANFSRAFGDEALHSAVFNTLLYVLV
TMVVAAFIAFFLAMLLEGPARHLRFIRTAIFLPAVTSAAIVAEMWRILFNPTSNGVVNHVLSWFSIEAQGFLADTDQALW
TVMLLHIWKAVPYNMVIFIAGLVGISRDLYDASNVDGANWWNRLRYVTLPGMIPALSVVLMLSFIRGFRVFAEVYATTGG
GPSNATEMIMTHIYKLGFEQFDYGYASAVSFLLFAFTVVLTIGHLTLKKRIARY

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789861, Length=299, Percent_Identity=29.7658862876254, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787570, Length=263, Percent_Identity=28.8973384030418, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI1790465, Length=249, Percent_Identity=28.5140562248996, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33235; Mature: 33235

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure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CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]