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The map label for this gene is ycjN [C]

Identifier: 218930486

GI number: 218930486

Start: 3877641

End: 3878954

Strand: Reverse

Name: ycjN [C]

Synonym: YPO3472

Alternate gene names: 218930486

Gene position: 3878954-3877641 (Counterclockwise)

Preceding gene: 218930490

Following gene: 218930485

Centisome position: 83.35

GC content: 47.72

Gene sequence:

>1314_bases
ATGAAGACGCAAATGATAATGTCAAAAGTAAAAATAAAGTCTTTGCTGTTGTTAACTTATTTAGCCATGGGGATCCCTTC
TCTTCACGCCGCAGAAACATTGCAAGTGTGGATCCGTGCAAGTAATGACTCTAAAAACATTTATAAAAAAGAAGCTGACA
CGTTTGAGAAAAAAACCGGTATCAAAATTGAATATTTCAATGCCACGACTGATTTTGAACAACGTCTGGCACGGGCCGCT
GCGGGCAACGCGCTACCCGATCTGATTTTCAACGATGCCGTGGCGATTGGTCAGTTTGTGCAGCTAGGGATTGTCGAACC
GATTGAACCAAAAAATATTATTGGCGGAGAGAACATCTTCGATACCGCCTGGAAAAGTACCCAATATATTGATGGAAAAT
ATTACGGGGTTCCCACCTCCGCTCAAACCTTTGCCTTATTTGTTCGCAAAGACTGGCGGGAAAAGTTGGGCTTAGAGCAA
CCGAAGAACTGGCAAGACATTAGCACGCTGGCGAAAGCCTTTACCTTTAATGACCCCGATGGCAACGGTAAAAATGATAC
TTACGGCTTTATTTTGCCTGGTTCAACAACCCGTGGCTACGCCAGTTGGTTTATCAGCTCCTACCTTTGGCAGGCGGGGG
GTGACTTTATTCGCCCAGCCGGTGAAGGTAAATTTATTGCCTCGCTGGAGGAGCCAGCAGCCACTGAAACCCTGAGTTTC
ATGCGCGGAATGGTGTGCGATAAAACAGTCCAGCCGGGGGCTATCAATGCGACCACCGCTGATGCGATCCCTTCATTCCG
TTCTGGCCAAAGTGGCATGTTCTTCTCCGGCCCATATCACATCGCGTTGTTTGATAAAGATCCCGGCACCGAGGCTTTTG
AAGTGATCCCGCCACCGACAGGGCCAAAAGGACAGGCTACGTTGGCTGAAGGCACTACGGTCTTTATGATGAAAAGCAGC
CAGAAAAAAGCAGCCGCTCAGAAATTCATTGAGTTCATGATCTCCCCTGAAGGGCAGCAGATCGGCATGGGAATGGGCAC
CAAAAACATGCCAGTCGTGCGCTTGTCGATCAATAAATTGGTGGATACCAAAGCGGTCTATGACGATCCACGTTGGGCCA
TATTCGCCGATCTGTATGCCGAACAGGGCCGCTATATTCCACAAGTTCCTAACTGGACACCTATTCGTCAGGTCACTGCT
GAAGGTTTCAACCGTATTTTAGCCAACTGTGACAGTGATATCGCCGCAGAATTAAAAGCGGTGAATCAGAAAGTTAATGA
TGAGTTGGCTAAACAGAACGTCTTAGGGCAGTGA

Upstream 100 bases:

>100_bases
CCTCTGAGTTCTAATGCTATCACGTGTTTTACGATTCTGTTTTGTTATTTAAACTTCTGGGTAAATTCATTAAAAATTAA
ATTTCAACGAGGATGCTAAG

Downstream 100 bases:

>100_bases
GTGAATAATGATAACGCTAACCCCCCGACTGAAACGTAACCTGGTTCCGTGGCTGTTCCTGGCCCCGGCACTGGTCATCT
TCACCTGGTTTAAATTCATC

Product: putative sugar binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 437; Mature: 437

Protein sequence:

>437_residues
MKTQMIMSKVKIKSLLLLTYLAMGIPSLHAAETLQVWIRASNDSKNIYKKEADTFEKKTGIKIEYFNATTDFEQRLARAA
AGNALPDLIFNDAVAIGQFVQLGIVEPIEPKNIIGGENIFDTAWKSTQYIDGKYYGVPTSAQTFALFVRKDWREKLGLEQ
PKNWQDISTLAKAFTFNDPDGNGKNDTYGFILPGSTTRGYASWFISSYLWQAGGDFIRPAGEGKFIASLEEPAATETLSF
MRGMVCDKTVQPGAINATTADAIPSFRSGQSGMFFSGPYHIALFDKDPGTEAFEVIPPPTGPKGQATLAEGTTVFMMKSS
QKKAAAQKFIEFMISPEGQQIGMGMGTKNMPVVRLSINKLVDTKAVYDDPRWAIFADLYAEQGRYIPQVPNWTPIRQVTA
EGFNRILANCDSDIAAELKAVNQKVNDELAKQNVLGQ

Sequences:

>Translated_437_residues
MKTQMIMSKVKIKSLLLLTYLAMGIPSLHAAETLQVWIRASNDSKNIYKKEADTFEKKTGIKIEYFNATTDFEQRLARAA
AGNALPDLIFNDAVAIGQFVQLGIVEPIEPKNIIGGENIFDTAWKSTQYIDGKYYGVPTSAQTFALFVRKDWREKLGLEQ
PKNWQDISTLAKAFTFNDPDGNGKNDTYGFILPGSTTRGYASWFISSYLWQAGGDFIRPAGEGKFIASLEEPAATETLSF
MRGMVCDKTVQPGAINATTADAIPSFRSGQSGMFFSGPYHIALFDKDPGTEAFEVIPPPTGPKGQATLAEGTTVFMMKSS
QKKAAAQKFIEFMISPEGQQIGMGMGTKNMPVVRLSINKLVDTKAVYDDPRWAIFADLYAEQGRYIPQVPNWTPIRQVTA
EGFNRILANCDSDIAAELKAVNQKVNDELAKQNVLGQ
>Mature_437_residues
MKTQMIMSKVKIKSLLLLTYLAMGIPSLHAAETLQVWIRASNDSKNIYKKEADTFEKKTGIKIEYFNATTDFEQRLARAA
AGNALPDLIFNDAVAIGQFVQLGIVEPIEPKNIIGGENIFDTAWKSTQYIDGKYYGVPTSAQTFALFVRKDWREKLGLEQ
PKNWQDISTLAKAFTFNDPDGNGKNDTYGFILPGSTTRGYASWFISSYLWQAGGDFIRPAGEGKFIASLEEPAATETLSF
MRGMVCDKTVQPGAINATTADAIPSFRSGQSGMFFSGPYHIALFDKDPGTEAFEVIPPPTGPKGQATLAEGTTVFMMKSS
QKKAAAQKFIEFMISPEGQQIGMGMGTKNMPVVRLSINKLVDTKAVYDDPRWAIFADLYAEQGRYIPQVPNWTPIRQVTA
EGFNRILANCDSDIAAELKAVNQKVNDELAKQNVLGQ

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787569, Length=459, Percent_Identity=23.7472766884532, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 48191; Mature: 48191

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTQMIMSKVKIKSLLLLTYLAMGIPSLHAAETLQVWIRASNDSKNIYKKEADTFEKKTG
CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEECCCCCHHHHHHHHHHHHHCC
IKIEYFNATTDFEQRLARAAAGNALPDLIFNDAVAIGQFVQLGIVEPIEPKNIIGGENIF
CEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH
DTAWKSTQYIDGKYYGVPTSAQTFALFVRKDWREKLGLEQPKNWQDISTLAKAFTFNDPD
HHHHCCCEEECCEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCC
GNGKNDTYGFILPGSTTRGYASWFISSYLWQAGGDFIRPAGEGKFIASLEEPAATETLSF
CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEECCCCCCCEEEECCCCHHHHHHHH
MRGMVCDKTVQPGAINATTADAIPSFRSGQSGMFFSGPYHIALFDKDPGTEAFEVIPPPT
HHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCEEECCCEEEEEEECCCCCCCEEEECCCC
GPKGQATLAEGTTVFMMKSSQKKAAAQKFIEFMISPEGQQIGMGMGTKNMPVVRLSINKL
CCCCCEEECCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEHHHH
VDTKAVYDDPRWAIFADLYAEQGRYIPQVPNWTPIRQVTAEGFNRILANCDSDIAAELKA
HHHHHHCCCCCEEEHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHH
VNQKVNDELAKQNVLGQ
HHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKTQMIMSKVKIKSLLLLTYLAMGIPSLHAAETLQVWIRASNDSKNIYKKEADTFEKKTG
CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEECCCCCHHHHHHHHHHHHHCC
IKIEYFNATTDFEQRLARAAAGNALPDLIFNDAVAIGQFVQLGIVEPIEPKNIIGGENIF
CEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH
DTAWKSTQYIDGKYYGVPTSAQTFALFVRKDWREKLGLEQPKNWQDISTLAKAFTFNDPD
HHHHCCCEEECCEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCC
GNGKNDTYGFILPGSTTRGYASWFISSYLWQAGGDFIRPAGEGKFIASLEEPAATETLSF
CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEECCCCCCCEEEECCCCHHHHHHHH
MRGMVCDKTVQPGAINATTADAIPSFRSGQSGMFFSGPYHIALFDKDPGTEAFEVIPPPT
HHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCEEECCCEEEEEEECCCCCCCEEEECCCC
GPKGQATLAEGTTVFMMKSSQKKAAAQKFIEFMISPEGQQIGMGMGTKNMPVVRLSINKL
CCCCCEEECCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEHHHH
VDTKAVYDDPRWAIFADLYAEQGRYIPQVPNWTPIRQVTAEGFNRILANCDSDIAAELKA
HHHHHHCCCCCEEEHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHH
VNQKVNDELAKQNVLGQ
HHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA