Click here to switch to the map view.

The map label for this gene is ybiU [H]

Identifier: 218930025

GI number: 218930025

Start: 3323658

End: 3324905

Strand: Direct

Name: ybiU [H]

Synonym: YPO2976

Alternate gene names: 218930025

Gene position: 3323658-3324905 (Clockwise)

Preceding gene: 218930022

Following gene: 218930028

Centisome position: 71.42

GC content: 50.16

Gene sequence:

>1248_bases
ATGGCTTCATTACACATAGACGATATCCCTGCGGCCATTAAAGCGGTCAAACAACAATTACGCCAGGCGCTCCCTGACTA
TCAACAAGTCTTTCAAGCCGTTGAAGAGAATATCCGCCAGCAAGTCATGGAGATCCGTCGTAATCTGGCCGAAGGTAAAA
ACCCGGTCCCACAACTCCATGCCGATGATATTATCAACGGTAAGGTGACTGAAGAACAAAAAGCGCAAATAAAACAACGC
GGCTGTTGTGCCATTCTCGGGGTATTTCCGCAGGAAAAAGCCACCGCATGGAACCGTGAAATTGGCGACTATCTGGATCG
TAACAACTTTGTCGAACGCTTGAAAAATGCGGCCGAAGACAATTATTTTGGCACGCTGGCGGCCAGTAAACCTCAGATTT
ATGGCATTTACTGGTCAACGCCACAGGTCGAAGCCCGTCAGGATAAGCGCATGCAGGCAGTGCAAATATTCTTAAATAAC
CTGTGGCAAACCGAAAGCAACGGTAAGCAACATTTTGATGCTAACCGTGTCGTCACCTATGCTGACCGCACACGCCGCCG
CCCACCAAAATCCTCTTCACTCGGCCTCTCTCCTCATGTGGATGGCGGTTCGATTGAACGCTGGCTGGATGAGAATTTCC
GCCATGTTTACCGCCATGTGTTCTCCGGTCAATGGCAAAAATATGATCCTTTCGCCGCTGAGGGCCGCCCGGAAGTCCGT
GAATTCCCCTCACCGGCGGTGTGTTCGATGTTCCGCACCTTCCAGGGATGGACCGCACTGACCCCACAGCGGACCCATGC
CGGAACCTTAAATGTTATTCCGATTGCTAATGCAATGGCTTACATATTACTGCGGGCCTTACAGGACGATGTCGCTGACG
ACGATTTGTGTGGCGCTGCACCCGGCCGTGCGTTATCAGCTTCTGAACAGTGGCATCCTCTTTTAATGGAAGCTATTTCC
CCTATTCCAGATTTAGAGGCGGGTGATACGGTCTTTTGGCACTGTGATGTGATCCATTCAGTAGAGAATGAACATAATGG
TGAGTTTGATAGTAACGTGATGTATATCGCTGCAGCGCCGTGGTGTGAAAAAAATGCGGCCTATTTGCCCCGCCAGTTAG
CCAGCTTTATTGATGGCCGTTCACCACCAGACTTTGCCGCGGATGATTTCGAGGTGGACTTTATTGGCAGAGCCACCATC
AAAAACCTCACTGAGATAGGTAAACAGCAGTTGGGCATAACAGACTAG

Upstream 100 bases:

>100_bases
CTTCTCTATTTTGACTGAATAATATTCACGTTAACATAACAAAAAATATACAAATAACCTGTTAAGTCCCAACCCCTACA
GCTCTCGGAGAATCAATATT

Downstream 100 bases:

>100_bases
CCTTCTTCCGCATCATATCTGCCGGAACTTATCCTCCCGGCAGATATTCTTCTACGCCCACGATAAAGACAATTCGGTTA
GCTTGACAACTCATACCCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 415; Mature: 414

Protein sequence:

>415_residues
MASLHIDDIPAAIKAVKQQLRQALPDYQQVFQAVEENIRQQVMEIRRNLAEGKNPVPQLHADDIINGKVTEEQKAQIKQR
GCCAILGVFPQEKATAWNREIGDYLDRNNFVERLKNAAEDNYFGTLAASKPQIYGIYWSTPQVEARQDKRMQAVQIFLNN
LWQTESNGKQHFDANRVVTYADRTRRRPPKSSSLGLSPHVDGGSIERWLDENFRHVYRHVFSGQWQKYDPFAAEGRPEVR
EFPSPAVCSMFRTFQGWTALTPQRTHAGTLNVIPIANAMAYILLRALQDDVADDDLCGAAPGRALSASEQWHPLLMEAIS
PIPDLEAGDTVFWHCDVIHSVENEHNGEFDSNVMYIAAAPWCEKNAAYLPRQLASFIDGRSPPDFAADDFEVDFIGRATI
KNLTEIGKQQLGITD

Sequences:

>Translated_415_residues
MASLHIDDIPAAIKAVKQQLRQALPDYQQVFQAVEENIRQQVMEIRRNLAEGKNPVPQLHADDIINGKVTEEQKAQIKQR
GCCAILGVFPQEKATAWNREIGDYLDRNNFVERLKNAAEDNYFGTLAASKPQIYGIYWSTPQVEARQDKRMQAVQIFLNN
LWQTESNGKQHFDANRVVTYADRTRRRPPKSSSLGLSPHVDGGSIERWLDENFRHVYRHVFSGQWQKYDPFAAEGRPEVR
EFPSPAVCSMFRTFQGWTALTPQRTHAGTLNVIPIANAMAYILLRALQDDVADDDLCGAAPGRALSASEQWHPLLMEAIS
PIPDLEAGDTVFWHCDVIHSVENEHNGEFDSNVMYIAAAPWCEKNAAYLPRQLASFIDGRSPPDFAADDFEVDFIGRATI
KNLTEIGKQQLGITD
>Mature_414_residues
ASLHIDDIPAAIKAVKQQLRQALPDYQQVFQAVEENIRQQVMEIRRNLAEGKNPVPQLHADDIINGKVTEEQKAQIKQRG
CCAILGVFPQEKATAWNREIGDYLDRNNFVERLKNAAEDNYFGTLAASKPQIYGIYWSTPQVEARQDKRMQAVQIFLNNL
WQTESNGKQHFDANRVVTYADRTRRRPPKSSSLGLSPHVDGGSIERWLDENFRHVYRHVFSGQWQKYDPFAAEGRPEVRE
FPSPAVCSMFRTFQGWTALTPQRTHAGTLNVIPIANAMAYILLRALQDDVADDDLCGAAPGRALSASEQWHPLLMEAISP
IPDLEAGDTVFWHCDVIHSVENEHNGEFDSNVMYIAAAPWCEKNAAYLPRQLASFIDGRSPPDFAADDFEVDFIGRATIK
NLTEIGKQQLGITD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787042, Length=408, Percent_Identity=50.7352941176471, Blast_Score=403, Evalue=1e-114,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010856 [H]

Pfam domain/function: PF07350 DUF1479 [H]

EC number: NA

Molecular weight: Translated: 46862; Mature: 46731

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASLHIDDIPAAIKAVKQQLRQALPDYQQVFQAVEENIRQQVMEIRRNLAEGKNPVPQLH
CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
ADDIINGKVTEEQKAQIKQRGCCAILGVFPQEKATAWNREIGDYLDRNNFVERLKNAAED
CCCCCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NYFGTLAASKPQIYGIYWSTPQVEARQDKRMQAVQIFLNNLWQTESNGKQHFDANRVVTY
CCEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCEEEE
ADRTRRRPPKSSSLGLSPHVDGGSIERWLDENFRHVYRHVFSGQWQKYDPFAAEGRPEVR
CHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
EFPSPAVCSMFRTFQGWTALTPQRTHAGTLNVIPIANAMAYILLRALQDDVADDDLCGAA
HCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCC
PGRALSASEQWHPLLMEAISPIPDLEAGDTVFWHCDVIHSVENEHNGEFDSNVMYIAAAP
CCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHHHCCCCCCCCCCEEEEEECC
WCEKNAAYLPRQLASFIDGRSPPDFAADDFEVDFIGRATIKNLTEIGKQQLGITD
CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
ASLHIDDIPAAIKAVKQQLRQALPDYQQVFQAVEENIRQQVMEIRRNLAEGKNPVPQLH
CCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
ADDIINGKVTEEQKAQIKQRGCCAILGVFPQEKATAWNREIGDYLDRNNFVERLKNAAED
CCCCCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NYFGTLAASKPQIYGIYWSTPQVEARQDKRMQAVQIFLNNLWQTESNGKQHFDANRVVTY
CCEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCEEEE
ADRTRRRPPKSSSLGLSPHVDGGSIERWLDENFRHVYRHVFSGQWQKYDPFAAEGRPEVR
CHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
EFPSPAVCSMFRTFQGWTALTPQRTHAGTLNVIPIANAMAYILLRALQDDVADDDLCGAA
HCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCC
PGRALSASEQWHPLLMEAISPIPDLEAGDTVFWHCDVIHSVENEHNGEFDSNVMYIAAAP
CCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHHHCCCCCCCCCCEEEEEECC
WCEKNAAYLPRQLASFIDGRSPPDFAADDFEVDFIGRATIKNLTEIGKQQLGITD
CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]