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The map label for this gene is dmsD [H]

Identifier: 218930017

GI number: 218930017

Start: 3317088

End: 3317753

Strand: Direct

Name: dmsD [H]

Synonym: YPO2968

Alternate gene names: 218930017

Gene position: 3317088-3317753 (Clockwise)

Preceding gene: 218930016

Following gene: 218930018

Centisome position: 71.28

GC content: 48.95

Gene sequence:

>666_bases
GTGAGTGAAGGCGGCCAACGCATCTGCAGCTTGAAATATGACGGGTATTACATAAGAGCGATAACCCCGATGCTACTCAA
TACCACCTTGCCGCGAATTTTAGGCGCGTGTTTTTATTATCCACCGCAATCAGATACGGTACAGCGCCTCTTTCCGTTAT
TGCCACACATTGCTGAGCTTTTCCCTTGGCCCGATCACGCGAGCATGGTGCAATATTGCCAGCAAATACCGGATATCTCC
CCCGAACGACTGGAGTACGATTTTTCGATTCTGTTTGAAGGGCAAGGTGTGATGCCTGCCCCGCCTTGGGGTTCCGTTTA
TCTGGATAAAGAAAATATTTTGATGGGTGCCAGCACCTTGCAATACCGTGAATTTTTAGCCGAACAGGGGTGGGTTAGCC
AAAGCCCTCTGCGTGAACCGGAAGATCAGTTTGGCTTAATGTTATTAGCATGGGTAAATTTGATCGAACAACATAATAAG
GACGCAGCTAGCGTGCTGCTAACCGCGCATTTACTGCCGTGGGCGTACCGTTATCTTGAACAGGTCAACGCAGCCCAAGT
CGAATACCCGGTTTATCCCTTACTGGCCAAAATAGCGGCTTGCTACCTGAAAACCTTGCAAACAGAGTTGGTATTATCTC
CTCTGCCCCGTGAGCTATATCGGTGA

Upstream 100 bases:

>100_bases
TGCAGCTTGAAATATGACGGATATCACCCTAAATAGTTCAAGTGGCAGGAAGGCGGCAATTGAGCGAATCCCCAGGAGCT
TACACCGGTAAGTGACTGGG

Downstream 100 bases:

>100_bases
CAAAAAATAAATCAGTGGCCAGAGACGAACGTTACTATAAAGCTTATCTGGAAAGCCGGACGATCAGCCGCCGGGGGCTA
TTTCGTGGCTTGCTGAAAGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 220

Protein sequence:

>221_residues
MSEGGQRICSLKYDGYYIRAITPMLLNTTLPRILGACFYYPPQSDTVQRLFPLLPHIAELFPWPDHASMVQYCQQIPDIS
PERLEYDFSILFEGQGVMPAPPWGSVYLDKENILMGASTLQYREFLAEQGWVSQSPLREPEDQFGLMLLAWVNLIEQHNK
DAASVLLTAHLLPWAYRYLEQVNAAQVEYPVYPLLAKIAACYLKTLQTELVLSPLPRELYR

Sequences:

>Translated_221_residues
MSEGGQRICSLKYDGYYIRAITPMLLNTTLPRILGACFYYPPQSDTVQRLFPLLPHIAELFPWPDHASMVQYCQQIPDIS
PERLEYDFSILFEGQGVMPAPPWGSVYLDKENILMGASTLQYREFLAEQGWVSQSPLREPEDQFGLMLLAWVNLIEQHNK
DAASVLLTAHLLPWAYRYLEQVNAAQVEYPVYPLLAKIAACYLKTLQTELVLSPLPRELYR
>Mature_220_residues
SEGGQRICSLKYDGYYIRAITPMLLNTTLPRILGACFYYPPQSDTVQRLFPLLPHIAELFPWPDHASMVQYCQQIPDISP
ERLEYDFSILFEGQGVMPAPPWGSVYLDKENILMGASTLQYREFLAEQGWVSQSPLREPEDQFGLMLLAWVNLIEQHNKD
AASVLLTAHLLPWAYRYLEQVNAAQVEYPVYPLLAKIAACYLKTLQTELVLSPLPRELYR

Specific function: Binds to the twin-arginine signal peptide of dmsA and torA. Could be required for the biogenesis of DMSO reductase rather than for the targeting of dmsA to the inner membrane [H]

COG id: COG3381

COG function: function code R; Uncharacterized component of anaerobic dehydrogenases

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein. Cytoplasm (By similarity). Note=Mainly cytoplasmic under aerobic conditions, and found in the inner membrane under anaerobic conditions (By similarity) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the torD/dmsD family. DmsD subfamily [H]

Homologues:

Organism=Escherichia coli, GI87081942, Length=191, Percent_Identity=34.5549738219895, Blast_Score=104, Evalue=6e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020945 [H]

Pfam domain/function: PF02613 Nitrate_red_del [H]

EC number: NA

Molecular weight: Translated: 25373; Mature: 25241

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEGGQRICSLKYDGYYIRAITPMLLNTTLPRILGACFYYPPQSDTVQRLFPLLPHIAEL
CCCCCCEEEEEEECCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
FPWPDHASMVQYCQQIPDISPERLEYDFSILFEGQGVMPAPPWGSVYLDKENILMGASTL
CCCCCHHHHHHHHHHCCCCCHHHHCCCEEEEEECCCCCCCCCCCCEEECCCCEEECHHHH
QYREFLAEQGWVSQSPLREPEDQFGLMLLAWVNLIEQHNKDAASVLLTAHLLPWAYRYLE
HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
QVNAAQVEYPVYPLLAKIAACYLKTLQTELVLSPLPRELYR
HHCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCC
>Mature Secondary Structure 
SEGGQRICSLKYDGYYIRAITPMLLNTTLPRILGACFYYPPQSDTVQRLFPLLPHIAEL
CCCCCEEEEEEECCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
FPWPDHASMVQYCQQIPDISPERLEYDFSILFEGQGVMPAPPWGSVYLDKENILMGASTL
CCCCCHHHHHHHHHHCCCCCHHHHCCCEEEEEECCCCCCCCCCCCEEECCCCEEECHHHH
QYREFLAEQGWVSQSPLREPEDQFGLMLLAWVNLIEQHNKDAASVLLTAHLLPWAYRYLE
HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
QVNAAQVEYPVYPLLAKIAACYLKTLQTELVLSPLPRELYR
HHCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]