Click here to switch to the map view.

The map label for this gene is yfhH [H]

Identifier: 218929981

GI number: 218929981

Start: 3271775

End: 3272614

Strand: Direct

Name: yfhH [H]

Synonym: YPO2926

Alternate gene names: 218929981

Gene position: 3271775-3272614 (Clockwise)

Preceding gene: 218929977

Following gene: 218929982

Centisome position: 70.3

GC content: 49.29

Gene sequence:

>840_bases
ATGAGTAGCCTCCTACGCATCCGCCAAATTTATTCCACGCTGGCACAAAATGACCGTAAGCTGGCGGATTTTTTGCTGAT
TAATCCCGAGCAGGCTCGCCATCTCAGTTCACAAAAGCTGGCGCAACAGACCGGTGTCAGCCAATCTGCTGTGGTCAAAT
TTGCCCAAAAATTAGGCTATAAAGGTTTCCCCGCGTTGAAACTGGCCCTGAGCGAAGTGGTCGCTATGCCGAAGGCGGTA
ACGCTGCATAATCAGATCTTGAGCACCGACAGTTTAAAAACAATTGGGGAGAAGTTGCTGAACGAGAAAACCGCAGCACT
GCGAGCAACCCTAGACATTAATAGCGAACAACGTCTCATCCAGGGATTAGGGATGTTACGCGCAGCACAAAAGGTGCTTT
TAATCGGCATTGGTGCCTCTGGTTTGGTTGCCAAAGATCTTGCCTATAAGTTACTAAAGATAGGCATCGTCGCCATCTCA
GAGACAGATATGCACGTGCAATTGGCGGCAGCACAAGCGCTGGGAGAGCAGGGTTTACTCTTGGCGATCTCTTTCAGTGG
CGAACGTCGTGAGATCAATCTGGCGGCGGAAGAGGCACAATATTGCGGTACCAAAGTGTTGGCGTTAACCCGCTTTTCCC
CTAACAGCTTGCAGCAGCGGGCAGATCACTGCTTGTATACCATTTCAGAAGAACCGGTTATCCGTAGCGCGGCGATCTCT
TCCAGTACCGCACAATACGCACTGACCGATCTTTTGTTTATGGCCATGATCCAGCAAGACATTGAAAATGCGCAAGATCA
TATTAAGCACAGTGCAGCACTGATCAAAAAGCTGATCTAA

Upstream 100 bases:

>100_bases
AAGTGTAGTCAACGCTCATAACTCAACCTTTTGCCATAAGTATTTATAGGTATCACTCATAAACATGTCAGAATACCTCC
CCAAACACAGGAACTGATTT

Downstream 100 bases:

>100_bases
TGGTAGGCAACAAAATAGCTTACTTGCGCATTTTGGTGTGACTCACTTAAGTTGTTTAATGCATAATACGCGATATAAAA
AGTAGGTTATGTAAAGTGGC

Product: putative DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 278

Protein sequence:

>279_residues
MSSLLRIRQIYSTLAQNDRKLADFLLINPEQARHLSSQKLAQQTGVSQSAVVKFAQKLGYKGFPALKLALSEVVAMPKAV
TLHNQILSTDSLKTIGEKLLNEKTAALRATLDINSEQRLIQGLGMLRAAQKVLLIGIGASGLVAKDLAYKLLKIGIVAIS
ETDMHVQLAAAQALGEQGLLLAISFSGERREINLAAEEAQYCGTKVLALTRFSPNSLQQRADHCLYTISEEPVIRSAAIS
SSTAQYALTDLLFMAMIQQDIENAQDHIKHSAALIKKLI

Sequences:

>Translated_279_residues
MSSLLRIRQIYSTLAQNDRKLADFLLINPEQARHLSSQKLAQQTGVSQSAVVKFAQKLGYKGFPALKLALSEVVAMPKAV
TLHNQILSTDSLKTIGEKLLNEKTAALRATLDINSEQRLIQGLGMLRAAQKVLLIGIGASGLVAKDLAYKLLKIGIVAIS
ETDMHVQLAAAQALGEQGLLLAISFSGERREINLAAEEAQYCGTKVLALTRFSPNSLQQRADHCLYTISEEPVIRSAAIS
SSTAQYALTDLLFMAMIQQDIENAQDHIKHSAALIKKLI
>Mature_278_residues
SSLLRIRQIYSTLAQNDRKLADFLLINPEQARHLSSQKLAQQTGVSQSAVVKFAQKLGYKGFPALKLALSEVVAMPKAVT
LHNQILSTDSLKTIGEKLLNEKTAALRATLDINSEQRLIQGLGMLRAAQKVLLIGIGASGLVAKDLAYKLLKIGIVAISE
TDMHVQLAAAQALGEQGLLLAISFSGERREINLAAEEAQYCGTKVLALTRFSPNSLQQRADHCLYTISEEPVIRSAAISS
STAQYALTDLLFMAMIQQDIENAQDHIKHSAALIKKLI

Specific function: Unknown

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI87082130, Length=282, Percent_Identity=60.6382978723404, Blast_Score=335, Evalue=2e-93,
Organism=Escherichia coli, GI1788767, Length=282, Percent_Identity=39.0070921985816, Blast_Score=179, Evalue=2e-46,
Organism=Escherichia coli, GI87082369, Length=275, Percent_Identity=21.8181818181818, Blast_Score=81, Evalue=6e-17,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 30345; Mature: 30214

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSLLRIRQIYSTLAQNDRKLADFLLINPEQARHLSSQKLAQQTGVSQSAVVKFAQKLGY
CCHHHHHHHHHHHHHHCCHHHHHHEEECHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
KGFPALKLALSEVVAMPKAVTLHNQILSTDSLKTIGEKLLNEKTAALRATLDINSEQRLI
CCCHHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHH
QGLGMLRAAQKVLLIGIGASGLVAKDLAYKLLKIGIVAISETDMHVQLAAAQALGEQGLL
HHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHCCCCCEE
LAISFSGERREINLAAEEAQYCGTKVLALTRFSPNSLQQRADHCLYTISEEPVIRSAAIS
EEEEECCCCEEEEHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHEEECCCCCHHHHHHHC
SSTAQYALTDLLFMAMIQQDIENAQDHIKHSAALIKKLI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
SSLLRIRQIYSTLAQNDRKLADFLLINPEQARHLSSQKLAQQTGVSQSAVVKFAQKLGY
CHHHHHHHHHHHHHHCCHHHHHHEEECHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
KGFPALKLALSEVVAMPKAVTLHNQILSTDSLKTIGEKLLNEKTAALRATLDINSEQRLI
CCCHHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHH
QGLGMLRAAQKVLLIGIGASGLVAKDLAYKLLKIGIVAISETDMHVQLAAAQALGEQGLL
HHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHCCCCCEE
LAISFSGERREINLAAEEAQYCGTKVLALTRFSPNSLQQRADHCLYTISEEPVIRSAAIS
EEEEECCCCEEEEHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHEEECCCCCHHHHHHHC
SSTAQYALTDLLFMAMIQQDIENAQDHIKHSAALIKKLI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 1602968; 7984428 [H]