Click here to switch to the map view.

The map label for this gene is rlpA

Identifier: 218929683

GI number: 218929683

Start: 2923211

End: 2924293

Strand: Reverse

Name: rlpA

Synonym: YPO2602

Alternate gene names: 218929683

Gene position: 2924293-2923211 (Counterclockwise)

Preceding gene: 218929684

Following gene: 218929682

Centisome position: 62.84

GC content: 53.09

Gene sequence:

>1083_bases
ATGCGTAAGGAATGGCTTTGGGTCGGCATCGCAAGTGTGCTGCTATCAGCATGTATTGATCAGCCTCCGGCCCCCCAGCA
ACAAGTACAACAAACCTACAGCGGCCCAGTTGAAGAAATTGGCGGGGCAGAACCGCGCTACGAACCTTTTAATCCTAACG
TTAATCAGGATTATAAAGTTAATGGCCAGTCCTACCGTATTATCAAAGATCCGCAGAATTTCTCTCAGATAGGGCTTGCT
TCTTCATATGGTGAAGAGGCACGTGGCAATACCACGGCAACCGGAGAAATTTTTGATCCCAATGCCTTGACCGCCGCTCA
CCCTACTCTGCCAATCCCAAGCTATGTCCGGGTAACTAACGTCAGTAATGGCCGCCAAATTGTGGTTCGTGTGAATGATC
GCGGCCCCTACACGCCGGGCCGTGTGATTGACTTATCCAGAGCAGCCGCAGATCGCTTAAATATTTCTAACAATACCAAG
GTGAAGATAGATTTTATCAATGTCGCGCCTGATGGCTCGCTGTCTGGCCCTGGTATGGTAGGCACCACCATCGCGAAACA
AAGCTATGCGTTACCCAGCCGCCCGGACCTAACATCAAGCGGGATGGGTACGCCGATGCAACAAGATGCCCCAGCAACCG
GTGCCGCTGTACAGGCGATTGATAACAGCCAGTTATCGGGTACTGATGCCACGCAACCCGTCGCATCACAAAGTAGTGGT
TTCCTAAGAGCGCCCACGCCAGTCCCTGCGGGTGTGCTGGAAAGCTCGGAGCCAGTGATAGATTCAGCGCCAGTCACCCC
CCCTGTGGTCGCCAATCCCGGCCCGGTCACTACAACACCAACATCCAGCGCGATATCAGGCGGTTATGTCGTTCAGGTCG
GTGCACTGAGCGATGCTCAGCGAGCACAGTCTTGGCAACAAAGCCTAAGCCAACGTTTTGGTGTTCCGGGTAAAGTGTCC
AACAGTGGCAGCATATACCGTGTTCAGCTAGGGCCTTTCAGTCATCGTCAACAAGCGGTTGATCTGCAACAACGCCTCTC
AAATGAAGCACAGCAGCAATCCTTTATCGTGGCAGCGCCCTAA

Upstream 100 bases:

>100_bases
TGGAGGCTCGGCGCTAGTAGTTCTGATGGCCGGGTTTGGTATCGTGATGTCGATACATACTCATCGAAAAATGTTATCTA
AGAATTTATAGAGGTGGGCA

Downstream 100 bases:

>100_bases
GGCAGACACGCCTTGTAGCAATTTAGACACTGACTAATAAAAATAACCGTAACCGCCTGTGCAAACAGGGTGTTACGGTT
AAAACTGTTTGGGTGAAATA

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 360; Mature: 360

Protein sequence:

>360_residues
MRKEWLWVGIASVLLSACIDQPPAPQQQVQQTYSGPVEEIGGAEPRYEPFNPNVNQDYKVNGQSYRIIKDPQNFSQIGLA
SSYGEEARGNTTATGEIFDPNALTAAHPTLPIPSYVRVTNVSNGRQIVVRVNDRGPYTPGRVIDLSRAAADRLNISNNTK
VKIDFINVAPDGSLSGPGMVGTTIAKQSYALPSRPDLTSSGMGTPMQQDAPATGAAVQAIDNSQLSGTDATQPVASQSSG
FLRAPTPVPAGVLESSEPVIDSAPVTPPVVANPGPVTTTPTSSAISGGYVVQVGALSDAQRAQSWQQSLSQRFGVPGKVS
NSGSIYRVQLGPFSHRQQAVDLQQRLSNEAQQQSFIVAAP

Sequences:

>Translated_360_residues
MRKEWLWVGIASVLLSACIDQPPAPQQQVQQTYSGPVEEIGGAEPRYEPFNPNVNQDYKVNGQSYRIIKDPQNFSQIGLA
SSYGEEARGNTTATGEIFDPNALTAAHPTLPIPSYVRVTNVSNGRQIVVRVNDRGPYTPGRVIDLSRAAADRLNISNNTK
VKIDFINVAPDGSLSGPGMVGTTIAKQSYALPSRPDLTSSGMGTPMQQDAPATGAAVQAIDNSQLSGTDATQPVASQSSG
FLRAPTPVPAGVLESSEPVIDSAPVTPPVVANPGPVTTTPTSSAISGGYVVQVGALSDAQRAQSWQQSLSQRFGVPGKVS
NSGSIYRVQLGPFSHRQQAVDLQQRLSNEAQQQSFIVAAP
>Mature_360_residues
MRKEWLWVGIASVLLSACIDQPPAPQQQVQQTYSGPVEEIGGAEPRYEPFNPNVNQDYKVNGQSYRIIKDPQNFSQIGLA
SSYGEEARGNTTATGEIFDPNALTAAHPTLPIPSYVRVTNVSNGRQIVVRVNDRGPYTPGRVIDLSRAAADRLNISNNTK
VKIDFINVAPDGSLSGPGMVGTTIAKQSYALPSRPDLTSSGMGTPMQQDAPATGAAVQAIDNSQLSGTDATQPVASQSSG
FLRAPTPVPAGVLESSEPVIDSAPVTPPVVANPGPVTTTPTSSAISGGYVVQVGALSDAQRAQSWQQSLSQRFGVPGKVS
NSGSIYRVQLGPFSHRQQAVDLQQRLSNEAQQQSFIVAAP

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family

Homologues:

Organism=Escherichia coli, GI1786852, Length=369, Percent_Identity=54.4715447154472, Blast_Score=342, Evalue=2e-95,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RLPA_YERPE (Q8ZDG6)

Other databases:

- EMBL:   AL590842
- EMBL:   AE009952
- EMBL:   AE017042
- PIR:   AF0317
- RefSeq:   NP_668502.1
- RefSeq:   NP_992480.1
- RefSeq:   YP_002347558.1
- ProteinModelPortal:   Q8ZDG6
- SMR:   Q8ZDG6
- GeneID:   1146123
- GeneID:   1175431
- GeneID:   2765403
- GenomeReviews:   AE009952_GR
- GenomeReviews:   AE017042_GR
- GenomeReviews:   AL590842_GR
- KEGG:   ype:YPO2602
- KEGG:   ypk:y1176
- KEGG:   ypm:YP_1111
- HOGENOM:   HBG701137
- OMA:   PYTPGRI
- ProtClustDB:   PRK10672
- BioCyc:   YPES187410:Y1176-MONOMER
- BioCyc:   YPES214092:YPO2602-MONOMER
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730
- Gene3D:   G3DSA:3.30.70.1070
- TIGRFAMs:   TIGR00413

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR; SSF50685 Barwin_like; SSF110997 Spore_cell-division_bac

EC number: NA

Molecular weight: Translated: 38019; Mature: 38019

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKEWLWVGIASVLLSACIDQPPAPQQQVQQTYSGPVEEIGGAEPRYEPFNPNVNQDYKV
CCCCEEHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCEEE
NGQSYRIIKDPQNFSQIGLASSYGEEARGNTTATGEIFDPNALTAAHPTLPIPSYVRVTN
CCCEEEEEECCCCHHHHCCHHHCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEE
VSNGRQIVVRVNDRGPYTPGRVIDLSRAAADRLNISNNTKVKIDFINVAPDGSLSGPGMV
CCCCCEEEEEECCCCCCCCCCEEEHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCC
GTTIAKQSYALPSRPDLTSSGMGTPMQQDAPATGAAVQAIDNSQLSGTDATQPVASQSSG
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHCCCC
FLRAPTPVPAGVLESSEPVIDSAPVTPPVVANPGPVTTTPTSSAISGGYVVQVGALSDAQ
CEECCCCCCCHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHCCCCEEEEECCCCCHH
RAQSWQQSLSQRFGVPGKVSNSGSIYRVQLGPFSHRQQAVDLQQRLSNEAQQQSFIVAAP
HHHHHHHHHHHHCCCCCEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCEEEECC
>Mature Secondary Structure
MRKEWLWVGIASVLLSACIDQPPAPQQQVQQTYSGPVEEIGGAEPRYEPFNPNVNQDYKV
CCCCEEHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCEEE
NGQSYRIIKDPQNFSQIGLASSYGEEARGNTTATGEIFDPNALTAAHPTLPIPSYVRVTN
CCCEEEEEECCCCHHHHCCHHHCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEE
VSNGRQIVVRVNDRGPYTPGRVIDLSRAAADRLNISNNTKVKIDFINVAPDGSLSGPGMV
CCCCCEEEEEECCCCCCCCCCEEEHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCC
GTTIAKQSYALPSRPDLTSSGMGTPMQQDAPATGAAVQAIDNSQLSGTDATQPVASQSSG
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHCCCC
FLRAPTPVPAGVLESSEPVIDSAPVTPPVVANPGPVTTTPTSSAISGGYVVQVGALSDAQ
CEECCCCCCCHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHCCCCEEEEECCCCCHH
RAQSWQQSLSQRFGVPGKVSNSGSIYRVQLGPFSHRQQAVDLQQRLSNEAQQQSFIVAAP
HHHHHHHHHHHHCCCCCEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430