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The map label for this gene is sdhC [H]

Identifier: 218928277

GI number: 218928277

Start: 1253388

End: 1253777

Strand: Direct

Name: sdhC [H]

Synonym: YPO1109

Alternate gene names: 218928277

Gene position: 1253388-1253777 (Clockwise)

Preceding gene: 218928275

Following gene: 218928278

Centisome position: 26.93

GC content: 45.9

Gene sequence:

>390_bases
GTGGGCAAAACCGTGAAAAAACAAAGACCTGTCAATTTGGATCTGCAAACGATTCGATTTCCTGTTACTGCGATAGCGTC
CATCTTACACCGAGTCTCTGGCGTAATTACCTTCGTGGCTGTCGGTATCCTCCTCTGGCTGTTGGGTTTGTCTGTTTCCT
CACAAGAAGGATTCATGCAGGCAGCAACCATCATGAATAGTTTTTTTGTTAAATTCATCTTTTGGGGAATACTCACTGCG
CTGGCTTATCACATTTGCGGTGGCATCCGTCACTTGTTAATGGATTTTGGCTATCTCGAAGAGAATTTAGCCGTGGGTAC
CCGTTCTGCTCAAGTGGCAATGGGATTAACCCTCGTGTTGTCAGTTTTGGCTGGAGTCCTCGTATGGTAA

Upstream 100 bases:

>100_bases
TCAGGATGCAATACTTAAACGTGCGATGTGAAGGGTTTCGACTCTTAACGCTGTCTGATTCCCCACCCAGGTCCGGAGGA
AGGAAAATAATAAGAGCTGT

Downstream 100 bases:

>100_bases
GCAATGCTTCTGCGTTAGGGCGTAATGGAGTACACGATTGGTTGTTACTGCGTGCTTCTGCAATCGTCATCACCCTGTAT
GTCTTTTATATTCTGGGCTT

Product: succinate dehydrogenase cytochrome b556 large membrane subunit

Products: fumarate; reduced acceptor

Alternate protein names: Cytochrome b-556 [H]

Number of amino acids: Translated: 129; Mature: 128

Protein sequence:

>129_residues
MGKTVKKQRPVNLDLQTIRFPVTAIASILHRVSGVITFVAVGILLWLLGLSVSSQEGFMQAATIMNSFFVKFIFWGILTA
LAYHICGGIRHLLMDFGYLEENLAVGTRSAQVAMGLTLVLSVLAGVLVW

Sequences:

>Translated_129_residues
MGKTVKKQRPVNLDLQTIRFPVTAIASILHRVSGVITFVAVGILLWLLGLSVSSQEGFMQAATIMNSFFVKFIFWGILTA
LAYHICGGIRHLLMDFGYLEENLAVGTRSAQVAMGLTLVLSVLAGVLVW
>Mature_128_residues
GKTVKKQRPVNLDLQTIRFPVTAIASILHRVSGVITFVAVGILLWLLGLSVSSQEGFMQAATIMNSFFVKFIFWGILTAL
AYHICGGIRHLLMDFGYLEENLAVGTRSAQVAMGLTLVLSVLAGVLVW

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b560 family [H]

Homologues:

Organism=Escherichia coli, GI1786940, Length=129, Percent_Identity=76.7441860465116, Blast_Score=203, Evalue=3e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018495
- InterPro:   IPR014314
- InterPro:   IPR014361
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 14080; Mature: 13949

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: PS01000 SDH_CYT_1 ; PS01001 SDH_CYT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKTVKKQRPVNLDLQTIRFPVTAIASILHRVSGVITFVAVGILLWLLGLSVSSQEGFMQ
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
AATIMNSFFVKFIFWGILTALAYHICGGIRHLLMDFGYLEENLAVGTRSAQVAMGLTLVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
SVLAGVLVW
HHHHHHHCC
>Mature Secondary Structure 
GKTVKKQRPVNLDLQTIRFPVTAIASILHRVSGVITFVAVGILLWLLGLSVSSQEGFMQ
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
AATIMNSFFVKFIFWGILTALAYHICGGIRHLLMDFGYLEENLAVGTRSAQVAMGLTLVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
SVLAGVLVW
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]