Click here to switch to the map view.

The map label for this gene is rnfH [H]

Identifier: 218928271

GI number: 218928271

Start: 1247070

End: 1247354

Strand: Direct

Name: rnfH [H]

Synonym: YPO1103

Alternate gene names: 218928271

Gene position: 1247070-1247354 (Clockwise)

Preceding gene: 218928270

Following gene: 218928275

Centisome position: 26.8

GC content: 47.37

Gene sequence:

>285_bases
GTGCCTGATATTCGCGTTGAGGTTGTATATGCCTTATCTGAACGCCAATACTTGCGCACTGTATCTTTGGTGGTTGGCAG
TACTGTTGAGGATGCGATCAAGGCATCAGGCTTACTGGAGTTACGGCCAGACATTGACCTGGAAAAAAATAAAGTGGGTA
TCTATAGTCGCCCGGTAAAACTCGGTGACAAACTCAATGATGGTGATCGGGTTGAAATATATCGCCCATTAATAGCCGAC
CCCAAAGAGCTTCGCCGGCAGCGAGCTGAGCAGGCAAAAAAGTAA

Upstream 100 bases:

>100_bases
TTTACAAATAAGCTAATTGAATTGGCATTCGGTAAAATATTCAAGGAGTTGGCTGGGAATATGGTGCAGGCTTTCACTCA
ACGGGCTAAAGAGGTCTACA

Downstream 100 bases:

>100_bases
GGCACAATCAGCGCCTTATTTTTTGTTGTCACTCTGGGCAGCCATTGAAAGAGAAACGCGGACTATCTTGTGGCTGAGTT
AACATCAATAGGTTTAGAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 94; Mature: 93

Protein sequence:

>94_residues
MPDIRVEVVYALSERQYLRTVSLVVGSTVEDAIKASGLLELRPDIDLEKNKVGIYSRPVKLGDKLNDGDRVEIYRPLIAD
PKELRRQRAEQAKK

Sequences:

>Translated_94_residues
MPDIRVEVVYALSERQYLRTVSLVVGSTVEDAIKASGLLELRPDIDLEKNKVGIYSRPVKLGDKLNDGDRVEIYRPLIAD
PKELRRQRAEQAKK
>Mature_93_residues
PDIRVEVVYALSERQYLRTVSLVVGSTVEDAIKASGLLELRPDIDLEKNKVGIYSRPVKLGDKLNDGDRVEIYRPLIADP
KELRRQRAEQAKK

Specific function: Unknown

COG id: COG2914

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0125 (rnfH) family [H]

Homologues:

Organism=Escherichia coli, GI87082139, Length=93, Percent_Identity=75.2688172043011, Blast_Score=136, Evalue=2e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005346 [H]

Pfam domain/function: PF03658 UPF0125 [H]

EC number: NA

Molecular weight: Translated: 10706; Mature: 10574

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDIRVEVVYALSERQYLRTVSLVVGSTVEDAIKASGLLELRPDIDLEKNKVGIYSRPVK
CCCCEEEEEEEHHHHHHHHHHHHHHCCCHHHHHHHCCCEEECCCCCCCCCCCCCEECCCC
LGDKLNDGDRVEIYRPLIADPKELRRQRAEQAKK
CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
PDIRVEVVYALSERQYLRTVSLVVGSTVEDAIKASGLLELRPDIDLEKNKVGIYSRPVK
CCCEEEEEEEHHHHHHHHHHHHHHCCCHHHHHHHCCCEEECCCCCCCCCCCCCEECCCC
LGDKLNDGDRVEIYRPLIADPKELRRQRAEQAKK
CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA