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The map label for this gene is ygdD [H]

Identifier: 218928198

GI number: 218928198

Start: 1171006

End: 1171401

Strand: Direct

Name: ygdD [H]

Synonym: YPO1030

Alternate gene names: 218928198

Gene position: 1171006-1171401 (Clockwise)

Preceding gene: 218928197

Following gene: 218928199

Centisome position: 25.16

GC content: 48.23

Gene sequence:

>396_bases
ATGAACAGTCGTTTAATGCTGATATTTTCCGCTCTGAGCGGTTTTTTCTATGTTGCTTTCGGTGCCTTCGGGGCTCATGT
ATTAAGCACCTCTCTGGGGCTGAATGAAATGGCCTGGATTCGTACCGGGCTGGAGTATCAGGGGTTCCATACGTTGGTTA
TTCTGATATTAGCTGTTGCGATGCAACGGCAGGTCAGTCTTTGGTTTTACTGGAGTGGGGCCTTGTTAGCGCTCGGAACG
CTACTCTTTAGCGGCAGTTTATACTGTCTGGCTCTATCACACCTGAGACTGTGGATATATATCACGCCAGTAGGCGGAGT
CTGTTTTCTGGCGGGATGGATTTTGATGTTGATTGGCGCACTGCGTCTAAGAAAAAGGGCAGAACGCCATGAATAA

Upstream 100 bases:

>100_bases
TGCGCAGTAATGACAACCCATTCATGATGGTAACCTGCCACGAATAGGGCGATTACCGGGCGATATAACGATAACTTTGT
CTAATTTAAGGTTAGTAACG

Downstream 100 bases:

>100_bases
TAAAATTGCTTTATATTGCCGCTCCGGCTTTGAGAAAGAGTGTGCGGCAGAAATAACAGAGAAGGCTGCACAGCTCGAAA
TCTTTGGTTTTGCACGGGTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
MNSRLMLIFSALSGFFYVAFGAFGAHVLSTSLGLNEMAWIRTGLEYQGFHTLVILILAVAMQRQVSLWFYWSGALLALGT
LLFSGSLYCLALSHLRLWIYITPVGGVCFLAGWILMLIGALRLRKRAERHE

Sequences:

>Translated_131_residues
MNSRLMLIFSALSGFFYVAFGAFGAHVLSTSLGLNEMAWIRTGLEYQGFHTLVILILAVAMQRQVSLWFYWSGALLALGT
LLFSGSLYCLALSHLRLWIYITPVGGVCFLAGWILMLIGALRLRKRAERHE
>Mature_131_residues
MNSRLMLIFSALSGFFYVAFGAFGAHVLSTSLGLNEMAWIRTGLEYQGFHTLVILILAVAMQRQVSLWFYWSGALLALGT
LLFSGSLYCLALSHLRLWIYITPVGGVCFLAGWILMLIGALRLRKRAERHE

Specific function: Unknown

COG id: COG2363

COG function: function code S; Uncharacterized small membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0382 family [H]

Homologues:

Organism=Escherichia coli, GI1789172, Length=131, Percent_Identity=71.7557251908397, Blast_Score=196, Evalue=4e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006696 [H]

Pfam domain/function: PF04241 DUF423 [H]

EC number: NA

Molecular weight: Translated: 14688; Mature: 14688

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSRLMLIFSALSGFFYVAFGAFGAHVLSTSLGLNEMAWIRTGLEYQGFHTLVILILAVA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHH
MQRQVSLWFYWSGALLALGTLLFSGSLYCLALSHLRLWIYITPVGGVCFLAGWILMLIGA
HHHHHHEEEEEHHHHHHHHHHHHHCCHHHHHHHHHEEEEEEECCCHHHHHHHHHHHHHHH
LRLRKRAERHE
HHHHHHHHCCC
>Mature Secondary Structure
MNSRLMLIFSALSGFFYVAFGAFGAHVLSTSLGLNEMAWIRTGLEYQGFHTLVILILAVA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHH
MQRQVSLWFYWSGALLALGTLLFSGSLYCLALSHLRLWIYITPVGGVCFLAGWILMLIGA
HHHHHHEEEEEHHHHHHHHHHHHHCCHHHHHHHHHEEEEEEECCCHHHHHHHHHHHHHHH
LRLRKRAERHE
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]