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The map label for this gene is yggR [H]

Identifier: 218928112

GI number: 218928112

Start: 1031548

End: 1032624

Strand: Reverse

Name: yggR [H]

Synonym: YPO0940

Alternate gene names: 218928112

Gene position: 1032624-1031548 (Counterclockwise)

Preceding gene: 218928119

Following gene: 218928102

Centisome position: 22.19

GC content: 48.19

Gene sequence:

>1077_bases
GTGTTTAGCCGTATAAAAGCCAAACGCATTGATTTAGAAAACCCTGACCTTGCCAGTGATGGCTTTAACAAACAGGATTT
TGCCAATAAGGTGGCGGCTAGTGTAGATCATAATGCTTCAGATCTGCACCTCTGTACCGGTTTTCACCCCGTATTACGTA
TCGATGGCGAGCTAAAAACCTTTACTGACTGGCCGAAGGTCACTGCTGGTTGGTTAAATGGGCTACGTCGGCATATGTTG
AGTGACGCACAAGAAAGCCGATTACAGCAACAGGGGCAGGTTGACTGTGCCTATACCACCGTGGGCAGTCAAAGGTTACG
GGCGAATATTTTCCAGCAACGACAGGGCCAATCCATTGCTTTTCGCATTATTCCTGCTATTTGTCCGTCACTGACACAAT
TGGCGGCACCACCTATTTTGAACCAATTGATTCAACAGGATAATGGACTAATTCTGGTAACGGGGGCGACGGGCAGCGGT
AAATCGACGACGCTGAGTGCCATGATAAGCGCGATTAATCAGCAACAGGCACGACATATTATTACCCTTGAGGACCCGAT
TGAATTTATTCATAGCAGTCAATCATGTTTGATCCAGCAACGAGAGCTTGGTCGCCATACTCACTGTTTTAGTCGTGCCC
TGAATGGGGCATTACGTCAGGATCCAGATATTATTTTACTCGGAGAGTTACGGGATCTGGAGACTATCCGATTAGCGCTG
ACAGCAGCAGAAACCGGGCATCTGGTGCTAGCCACATTGCATACCCGCACGGCAACACAGGCTATTGATCGGCTGATTGA
TGTTTTTCCTCCTGAGGAGAAAGCCGTTATACGGACGCAACTGGCTGCCAGTTTACGCGGTGTTATCACGCAGAAATTGT
GTCGTCAAAATGGCGGTGGGCGTATAGCTGTATTTGAGATACTCACGCAAACCACGGCAGTCAGCCATTTGATCCGAGAA
GGTAAAACCTATCAATTACCAACCGTGATACAGGCCGGAGGGCAATGGGGGATGCAAACCTTTGAGCAAAGTATCGCACA
ACGGCAAAAACAGGGGGTTTTGGCTATCAATCACTGA

Upstream 100 bases:

>100_bases
GACATCCTGTAGATTCTGTTGGATAGTACTCATATGGACCCAGGAGTTGGATATGGATTTCACAAGCCTGAATAATCAAC
ATTCAGATCTGAATAACCCC

Downstream 100 bases:

>100_bases
TGGGGGAGGCACCGCTGACACTGTAGTTATTTCAAGGGAGAAGGTGATGCAATAAATTAACCCGGATCGGATGATCCGGG
TCAAGCAGGCGGCTTATTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 358; Mature: 358

Protein sequence:

>358_residues
MFSRIKAKRIDLENPDLASDGFNKQDFANKVAASVDHNASDLHLCTGFHPVLRIDGELKTFTDWPKVTAGWLNGLRRHML
SDAQESRLQQQGQVDCAYTTVGSQRLRANIFQQRQGQSIAFRIIPAICPSLTQLAAPPILNQLIQQDNGLILVTGATGSG
KSTTLSAMISAINQQQARHIITLEDPIEFIHSSQSCLIQQRELGRHTHCFSRALNGALRQDPDIILLGELRDLETIRLAL
TAAETGHLVLATLHTRTATQAIDRLIDVFPPEEKAVIRTQLAASLRGVITQKLCRQNGGGRIAVFEILTQTTAVSHLIRE
GKTYQLPTVIQAGGQWGMQTFEQSIAQRQKQGVLAINH

Sequences:

>Translated_358_residues
MFSRIKAKRIDLENPDLASDGFNKQDFANKVAASVDHNASDLHLCTGFHPVLRIDGELKTFTDWPKVTAGWLNGLRRHML
SDAQESRLQQQGQVDCAYTTVGSQRLRANIFQQRQGQSIAFRIIPAICPSLTQLAAPPILNQLIQQDNGLILVTGATGSG
KSTTLSAMISAINQQQARHIITLEDPIEFIHSSQSCLIQQRELGRHTHCFSRALNGALRQDPDIILLGELRDLETIRLAL
TAAETGHLVLATLHTRTATQAIDRLIDVFPPEEKAVIRTQLAASLRGVITQKLCRQNGGGRIAVFEILTQTTAVSHLIRE
GKTYQLPTVIQAGGQWGMQTFEQSIAQRQKQGVLAINH
>Mature_358_residues
MFSRIKAKRIDLENPDLASDGFNKQDFANKVAASVDHNASDLHLCTGFHPVLRIDGELKTFTDWPKVTAGWLNGLRRHML
SDAQESRLQQQGQVDCAYTTVGSQRLRANIFQQRQGQSIAFRIIPAICPSLTQLAAPPILNQLIQQDNGLILVTGATGSG
KSTTLSAMISAINQQQARHIITLEDPIEFIHSSQSCLIQQRELGRHTHCFSRALNGALRQDPDIILLGELRDLETIRLAL
TAAETGHLVLATLHTRTATQAIDRLIDVFPPEEKAVIRTQLAASLRGVITQKLCRQNGGGRIAVFEILTQTTAVSHLIRE
GKTYQLPTVIQAGGQWGMQTFEQSIAQRQKQGVLAINH

Specific function: Unknown

COG id: COG2805

COG function: function code NU; Tfp pilus assembly protein, pilus retraction ATPase PilT

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

Organism=Escherichia coli, GI87082188, Length=325, Percent_Identity=56.3076923076923, Blast_Score=350, Evalue=1e-97,
Organism=Escherichia coli, GI1789723, Length=278, Percent_Identity=36.3309352517986, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1786296, Length=277, Percent_Identity=34.2960288808664, Blast_Score=114, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR006321
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 39494; Mature: 39494

Theoretical pI: Translated: 8.86; Mature: 8.86

Prosite motif: PS00662 T2SP_E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSRIKAKRIDLENPDLASDGFNKQDFANKVAASVDHNASDLHLCTGFHPVLRIDGELKT
CCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCEEEEECCCCCC
FTDWPKVTAGWLNGLRRHMLSDAQESRLQQQGQVDCAYTTVGSQRLRANIFQQRQGQSIA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCCC
FRIIPAICPSLTQLAAPPILNQLIQQDNGLILVTGATGSGKSTTLSAMISAINQQQARHI
EEEHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCEE
ITLEDPIEFIHSSQSCLIQQRELGRHTHCFSRALNGALRQDPDIILLGELRDLETIRLAL
EEEHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHCCHHHCCCCEEEECCCCCHHHHHEEE
TAAETGHLVLATLHTRTATQAIDRLIDVFPPEEKAVIRTQLAASLRGVITQKLCRQNGGG
EECCCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
RIAVFEILTQTTAVSHLIREGKTYQLPTVIQAGGQWGMQTFEQSIAQRQKQGVLAINH
EEEHHHHHHHHHHHHHHHHCCCCEECCHHHHCCCCCCHHHHHHHHHHHHHCCCEEECC
>Mature Secondary Structure
MFSRIKAKRIDLENPDLASDGFNKQDFANKVAASVDHNASDLHLCTGFHPVLRIDGELKT
CCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCEEEEECCCCCC
FTDWPKVTAGWLNGLRRHMLSDAQESRLQQQGQVDCAYTTVGSQRLRANIFQQRQGQSIA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCCC
FRIIPAICPSLTQLAAPPILNQLIQQDNGLILVTGATGSGKSTTLSAMISAINQQQARHI
EEEHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCEE
ITLEDPIEFIHSSQSCLIQQRELGRHTHCFSRALNGALRQDPDIILLGELRDLETIRLAL
EEEHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHCCHHHCCCCEEEECCCCCHHHHHEEE
TAAETGHLVLATLHTRTATQAIDRLIDVFPPEEKAVIRTQLAASLRGVITQKLCRQNGGG
EECCCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
RIAVFEILTQTTAVSHLIREGKTYQLPTVIQAGGQWGMQTFEQSIAQRQKQGVLAINH
EEEHHHHHHHHHHHHHHHHCCCCEECCHHHHCCCCCCHHHHHHHHHHHHHCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]