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The map label for this gene is yhjC [H]

Identifier: 218927825

GI number: 218927825

Start: 690801

End: 691733

Strand: Direct

Name: yhjC [H]

Synonym: YPO0631

Alternate gene names: 218927825

Gene position: 690801-691733 (Clockwise)

Preceding gene: 218927822

Following gene: 218927828

Centisome position: 14.84

GC content: 55.41

Gene sequence:

>933_bases
ATGGATAAGTTTTCCGCGATGACCACTTTTGCCAAAGTGGTGGAGACTGGCAGCTTCACCCGAGCGGCAGATGTGTTAGC
GCTGCCCAAGGCGCGGGTATCCCAGCGAGTTTCCGATCTTGAGCGTCATCTGGGTGTACGGTTGCTCAATCGCACGACGC
GTAGCTTGAATTTGACCGAGGATGGACAGGCCTATTTCGCCAAGTGTCAGGTCATCCTTCAGGAAATCGACGAATTGGAA
GGGGCGCTCAAGGGGGGCTCGGTAGAACCTCGCGGAAAGTTGCGGGTCGAAGCGCTTGTGTCTGTTGCCCGCTGGGTGAT
CGCTCCGAGCCTGCATGAGTTTCAAGCCCGTTACCCCAATATCTCAGTGCGTTTGGGGGGAAGTGATCGTATCAGCCATC
TGTTGGATAATGGAATCGACTGTGCCATCCGAGGTGGTCATCTGGAAGACTCCAGCCAGATCGCGCGCCACGTCTGTGAC
GTACATTTGGGGCTTTATGCCGCCCCGGCTTACCTCGAAGCTGCTGGTGCGGTGACCCATCCGCAGGAACTAAGCGTTCA
TCGCCGAATCTCGTGGTTTACCGGTCAACGCAATCCTTTTATTTGGTCGCTGCAGTCAGCGTCTGACGCTTTCGAGTTGC
CTGCGGAGGAGGGGTTGCTGTTCGATGATCCGGATGTTGCACTCGCTTCGTGCATGGCTGGAAGCGGAATCTGCCCAGGA
GCCCCTTTCGCTGTGGAAAGCTGGGTACGCGCTGGAGCGTTGGTGCCGGTATTACCGCATTGGCGCTTCAAGGCCCGCCC
AATCCATATTATTTATCCGAGCAATAGGCACCTTTCCGCACGGGTACGCTGTTTTGTGGATTGGTCGCTTGAGATGATGC
AAGCAAATACGAGTATGCGAATAACACCTTGGGAACTGGCTGAACGTATTTAA

Upstream 100 bases:

>100_bases
GCCTCAGTTTGGTAGTAAAAGAAGTTAATTTTAATTGGTATCGAAAAGTTGATATATATGTAAAATAATGAATCTCTGTT
CAACTTTATTTGACAATTAA

Downstream 100 bases:

>100_bases
AAAGGCGACATTTTCAGCCGTTAGCACCGGTGGAGCCCGCCATTACTGGTTTTTGCCTAGAAGTTTAGTTTATTCCCCGA
GGGGGTAGGCCTTATCGTGC

Product: LysR family regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MDKFSAMTTFAKVVETGSFTRAADVLALPKARVSQRVSDLERHLGVRLLNRTTRSLNLTEDGQAYFAKCQVILQEIDELE
GALKGGSVEPRGKLRVEALVSVARWVIAPSLHEFQARYPNISVRLGGSDRISHLLDNGIDCAIRGGHLEDSSQIARHVCD
VHLGLYAAPAYLEAAGAVTHPQELSVHRRISWFTGQRNPFIWSLQSASDAFELPAEEGLLFDDPDVALASCMAGSGICPG
APFAVESWVRAGALVPVLPHWRFKARPIHIIYPSNRHLSARVRCFVDWSLEMMQANTSMRITPWELAERI

Sequences:

>Translated_310_residues
MDKFSAMTTFAKVVETGSFTRAADVLALPKARVSQRVSDLERHLGVRLLNRTTRSLNLTEDGQAYFAKCQVILQEIDELE
GALKGGSVEPRGKLRVEALVSVARWVIAPSLHEFQARYPNISVRLGGSDRISHLLDNGIDCAIRGGHLEDSSQIARHVCD
VHLGLYAAPAYLEAAGAVTHPQELSVHRRISWFTGQRNPFIWSLQSASDAFELPAEEGLLFDDPDVALASCMAGSGICPG
APFAVESWVRAGALVPVLPHWRFKARPIHIIYPSNRHLSARVRCFVDWSLEMMQANTSMRITPWELAERI
>Mature_310_residues
MDKFSAMTTFAKVVETGSFTRAADVLALPKARVSQRVSDLERHLGVRLLNRTTRSLNLTEDGQAYFAKCQVILQEIDELE
GALKGGSVEPRGKLRVEALVSVARWVIAPSLHEFQARYPNISVRLGGSDRISHLLDNGIDCAIRGGHLEDSSQIARHVCD
VHLGLYAAPAYLEAAGAVTHPQELSVHRRISWFTGQRNPFIWSLQSASDAFELPAEEGLLFDDPDVALASCMAGSGICPG
APFAVESWVRAGALVPVLPHWRFKARPIHIIYPSNRHLSARVRCFVDWSLEMMQANTSMRITPWELAERI

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=295, Percent_Identity=33.8983050847458, Blast_Score=169, Evalue=2e-43,
Organism=Escherichia coli, GI1786401, Length=283, Percent_Identity=33.5689045936396, Blast_Score=152, Evalue=2e-38,
Organism=Escherichia coli, GI1789639, Length=297, Percent_Identity=32.3232323232323, Blast_Score=142, Evalue=4e-35,
Organism=Escherichia coli, GI1787128, Length=287, Percent_Identity=27.5261324041812, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI87081978, Length=286, Percent_Identity=28.3216783216783, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1787589, Length=290, Percent_Identity=25.8620689655172, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1789440, Length=282, Percent_Identity=27.6595744680851, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1789173, Length=258, Percent_Identity=28.2945736434109, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1788706, Length=303, Percent_Identity=26.0726072607261, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1788481, Length=290, Percent_Identity=25.1724137931034, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI157672245, Length=119, Percent_Identity=34.453781512605, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1786448, Length=293, Percent_Identity=22.8668941979522, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI145693105, Length=153, Percent_Identity=25.4901960784314, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34319; Mature: 34319

Theoretical pI: Translated: 7.33; Mature: 7.33

Prosite motif: PS50931 HTH_LYSR ; PS00217 SUGAR_TRANSPORT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKFSAMTTFAKVVETGSFTRAADVLALPKARVSQRVSDLERHLGVRLLNRTTRSLNLTE
CCCHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DGQAYFAKCQVILQEIDELEGALKGGSVEPRGKLRVEALVSVARWVIAPSLHEFQARYPN
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCC
ISVRLGGSDRISHLLDNGIDCAIRGGHLEDSSQIARHVCDVHLGLYAAPAYLEAAGAVTH
EEEEECCCHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCC
PQELSVHRRISWFTGQRNPFIWSLQSASDAFELPAEEGLLFDDPDVALASCMAGSGICPG
HHHHHHHHHEEEECCCCCCEEEEECCCCCCCCCCHHCCCEECCCCHHHHHHHCCCCCCCC
APFAVESWVRAGALVPVLPHWRFKARPIHIIYPSNRHLSARVRCFVDWSLEMMQANTSMR
CCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEEEECCHHHHHCCCCEE
ITPWELAERI
ECHHHHHHCC
>Mature Secondary Structure
MDKFSAMTTFAKVVETGSFTRAADVLALPKARVSQRVSDLERHLGVRLLNRTTRSLNLTE
CCCHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DGQAYFAKCQVILQEIDELEGALKGGSVEPRGKLRVEALVSVARWVIAPSLHEFQARYPN
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCC
ISVRLGGSDRISHLLDNGIDCAIRGGHLEDSSQIARHVCDVHLGLYAAPAYLEAAGAVTH
EEEEECCCHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCC
PQELSVHRRISWFTGQRNPFIWSLQSASDAFELPAEEGLLFDDPDVALASCMAGSGICPG
HHHHHHHHHEEEECCCCCCEEEEECCCCCCCCCCHHCCCEECCCCHHHHHHHCCCCCCCC
APFAVESWVRAGALVPVLPHWRFKARPIHIIYPSNRHLSARVRCFVDWSLEMMQANTSMR
CCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEEEECCHHHHHCCCCEE
ITPWELAERI
ECHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]