Click here to switch to the map view.

The map label for this gene is ycdK [C]

Identifier: 218927822

GI number: 218927822

Start: 688742

End: 689146

Strand: Direct

Name: ycdK [C]

Synonym: YPO0628

Alternate gene names: 218927822

Gene position: 688742-689146 (Clockwise)

Preceding gene: 218927821

Following gene: 218927825

Centisome position: 14.8

GC content: 51.11

Gene sequence:

>405_bases
ATGAATAGACGTGTAATCAATCCCGAGACGATGTACCCCAGTGTGCCATTCGGTTTTTCTCATGCGGTTGAACAGCTATC
GGGTCGGACGTTGCACATTGCCGGACAAGTGGCATGGAATGCCAATGGCGAGTTAGTTGGGGGGCAGGATCTACTGGCGC
AAACTCAGCAAGTTCTGGCAAATCTTAAAGAAGTCCTGCGCTATGCCGGGGCCACGCCTGCTGATGTTGTACGTCTACGG
ACCTATGTGGTCAACCATTCACCGGCGAATTTGGCCGCAATTTGCGCACAAATCGGGGCTTTTTATGAGGGCGCAGACCC
TGCGGCAAATTCATTTATTGGTGTACAGGCACTAGCATTACCTGAACTTCTCATTGAAATAGAAGCGACTGCTTGCTTGG
GCTGA

Upstream 100 bases:

>100_bases
GCCAAGTTAAAATATATGAGAGAAAAATATTTTAATTAATTAAGATTTGTATTTGTCGTTTTGTAAACCTACGGCGGTCC
ATCAATAATGGAGAGTTATC

Downstream 100 bases:

>100_bases
TAATAAAATGAAGAGTAGCCGCTTGCGGCTGGAACGACTGTTTTATTAGTACATTATTTTCCTCAGTAATCTGTACGACG
CTGGTGTAGGAATGGGGTAA

Product: putative translational inhibitor protein

Products: NA

Alternate protein names: Translational Inhibitor Protein

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MNRRVINPETMYPSVPFGFSHAVEQLSGRTLHIAGQVAWNANGELVGGQDLLAQTQQVLANLKEVLRYAGATPADVVRLR
TYVVNHSPANLAAICAQIGAFYEGADPAANSFIGVQALALPELLIEIEATACLG

Sequences:

>Translated_134_residues
MNRRVINPETMYPSVPFGFSHAVEQLSGRTLHIAGQVAWNANGELVGGQDLLAQTQQVLANLKEVLRYAGATPADVVRLR
TYVVNHSPANLAAICAQIGAFYEGADPAANSFIGVQALALPELLIEIEATACLG
>Mature_134_residues
MNRRVINPETMYPSVPFGFSHAVEQLSGRTLHIAGQVAWNANGELVGGQDLLAQTQQVLANLKEVLRYAGATPADVVRLR
TYVVNHSPANLAAICAQIGAFYEGADPAANSFIGVQALALPELLIEIEATACLG

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14228; Mature: 14228

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRRVINPETMYPSVPFGFSHAVEQLSGRTLHIAGQVAWNANGELVGGQDLLAQTQQVLA
CCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEEEEECCCCCEECCHHHHHHHHHHHH
NLKEVLRYAGATPADVVRLRTYVVNHSPANLAAICAQIGAFYEGADPAANSFIGVQALAL
HHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
PELLIEIEATACLG
HHHHHHHHHHHCCC
>Mature Secondary Structure
MNRRVINPETMYPSVPFGFSHAVEQLSGRTLHIAGQVAWNANGELVGGQDLLAQTQQVLA
CCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEEEEECCCCCEECCHHHHHHHHHHHH
NLKEVLRYAGATPADVVRLRTYVVNHSPANLAAICAQIGAFYEGADPAANSFIGVQALAL
HHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
PELLIEIEATACLG
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA